PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G374100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27693.6 Da    PI: 8.4528
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G374100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Aqcoe3G374100.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59
                       79***********************************************96 PP
2K-box97.91.5e-32801737100
              K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        +s++++++++ +qe+ +Lk+++e Lq++qR+llGe+L+sLs keL qLe+qL+ slk+iR +K++++l+q+++lq ke+ l+e+n +Lr+kl
  Aqcoe3G374100.1.p  80 TSTSAKETQNNYQEYLRLKARVEILQQSQRNLLGEELGSLSTKELDQLEHQLDMSLKQIRCTKTQFMLDQLSDLQGKEQVLEEANSSLRRKL 171
                        34788999***********************************************************************************9 PP

              K-box  99 ee 100
                        +e
  Aqcoe3G374100.1.p 172 DE 173
                        86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.627161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.79E-44278No hitNo description
SuperFamilySSF554554.71E-34284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-33323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2783171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.64987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCST  60
SSMLKTLDKY QKSSYAALET STSAKETQNN YQEYLRLKAR VEILQQSQRN LLGEELGSLS  120
TKELDQLEHQ LDMSLKQIRC TKTQFMLDQL SDLQGKEQVL EEANSSLRRK LDERIAENAL  180
RLPWASGEQN IPYCRQPAQS EEFFQPLGCN STLHVGYNHV GPEQITVAAP AQNINGFIPG  240
WMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-28751711101Developmental protein SEPALLATA 3
4ox0_B2e-28751711101Developmental protein SEPALLATA 3
4ox0_C2e-28751711101Developmental protein SEPALLATA 3
4ox0_D2e-28751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802450.0JX680245.1 Aquilegia coerulea MADS-box protein SEP2A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260833.11e-142PREDICTED: MADS-box protein CMB1 isoform X1
RefseqXP_019053922.11e-142PREDICTED: MADS-box protein CMB1 isoform X1
SwissprotQ8LLR21e-125MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLK7X7E71e-180K7X7E7_AQUCA; MADS-box protein SEP2A
STRINGAquca_002_00916.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]