PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G371200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 549aa    MW: 61065.9 Da    PI: 7.6503
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G371200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.1e-42174250177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cqv+gC++dls+ keyhrrhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Aqcoe3G371200.1.p 174 VCQVHGCHMDLSSSKEYHRRHKVCEIHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQ 250
                        6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.3E-34171236IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.641172249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-39173253IPR004333Transcription factor, SBP-box
PfamPF031101.3E-31175248IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MESWNYGSEG KGFGLTNEMV SNTDTGARSR KVVMGWDLKN PFNYENTRLD SGRDVDEENQ  60
VFMELGLPDS RKPLPGNLYG GLCDGKMSSG IMSSSTCMTD SKELSREESS LSFSSTVRDS  120
NSRDSSLFDL KLGRLADFQE THVSKEMTSL SSSVVSSVPE KRPRTNSLTY QIPVCQVHGC  180
HMDLSSSKEY HRRHKVCEIH SKTAKVIVNG IEQRFCQQCS RFHLLVEFDD GKRSCRKRLA  240
GHNERRRKPQ LDSHSGRNGK LHLPYNGSRL VGTSLPMRTS LTSSTMFPRG IVHPVKHESS  300
NWCSRVKLED EEFYNHYSMT PVINEHLLQK PQYGVEKHYS VHGHGINTAR TGSFFEKSTW  360
YPHNLPDSDS DSQFVLRAAS SCREDITAYN TASSQGVSGV SDSSSALSLL SSQSQNSSTH  420
SAGIPMSQPP LIQGNNIHYN LDQFPQKIYG YSSQSSTSLL SNRYSSSMEY GQLGPMVASE  480
NNSVIFDIDT GGIFQGSEVV NNKGPISHEH ASTVDLLQLS SELHRVEHQR HSMQVKRGNG  540
TFCCLPIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30172248884squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257963.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257964.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257965.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257967.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257968.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257969.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A2G5F5760.0A0A2G5F576_AQUCA; Uncharacterized protein
STRINGAquca_002_00889.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-46SBP family protein