PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G370100.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family TCP
Protein Properties Length: 398aa    MW: 43590.3 Da    PI: 9.0947
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G370100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.56.1e-3150152389
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsss 87 
                        g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak++i+el+ ++ s+ +++                s+++ 
  Aqcoe3G370100.4.p  50 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKQEIDELPPLPISPGNFSqftqamiG--------SHDQV 133
                        79*************************************************************8888877733222111........11111 PP

                TCP  88 g.................k 89 
                        +                 k
  Aqcoe3G370100.4.p 134 SgfqsslaslvdvnldleK 152
                        1222333344444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.54851109IPR017887Transcription factor TCP subgroup
PfamPF036349.7E-2951162IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MINNSKEKGV SAKQEGKASD SKLTKGPSSS RSQWSGLKDP RVVRVSRSFG GKDRHSKVCT  60
IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN VAKQEIDELP PLPISPGNFS  120
QFTQAMIGSH DQVSGFQSSL ASLVDVNLDL EKEDRSHSLL SSRGGFKIND INPGEDQTTR  180
SAFWNLNAPL RSEEVTRENI PVKSNWMKRN DQDSQGGFEV HNAEGSSQNP LPRATNNTSF  240
SGLFNNVMPP YNSYYHWDPS NLSLSHLGSH GLSIQTDQDP HNFNVVPQLS LPPSSQLLLC  300
PSGTSPSFFS PYVTTQADGN PRQTSNHLQM LSSSSPNFIG NSLTPNVYSL SQPVARPLQL  360
GLTPNFQSPQ EHNASQSNKG NSTGRSCFPT DSKSTFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1856110155Putative transcription factor PCF6
5zkt_B4e-1856110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3315390.0KP331539.1 Aquilegia coerulea TCP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258030.11e-122PREDICTED: transcription factor TCP5-like
RefseqXP_010258031.11e-122PREDICTED: transcription factor TCP5-like
TrEMBLA0A2G5F5950.0A0A2G5F595_AQUCA; TCP2
STRINGAquca_002_00878.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-49plastid transcription factor 1