PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G353200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 538aa    MW: 58943.2 Da    PI: 8.6465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G353200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.2e-34242298259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnhe
  Aqcoe3G353200.1.p 242 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGHVTEIIYKGQHNHE 298
                        8****************************************.***************8 PP
2WRKY1053.9e-33422480159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k+v++tYeg+Hnh+
  Aqcoe3G353200.1.p 422 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSQGCNVRKHVERASTDAKAVITTYEGKHNHD 480
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-30238300IPR003657WRKY domain
SuperFamilySSF1182901.96E-26239300IPR003657WRKY domain
SMARTSM007742.2E-38241299IPR003657WRKY domain
PfamPF031067.4E-26242298IPR003657WRKY domain
PROSITE profilePS5081123.284242300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37407482IPR003657WRKY domain
SuperFamilySSF1182902.88E-29414482IPR003657WRKY domain
PROSITE profilePS5081138.985417482IPR003657WRKY domain
SMARTSM007741.7E-39422481IPR003657WRKY domain
PfamPF031068.0E-26423480IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAENNEVSRR RTKVPSSSRP TICLPTRSSA ENIFTGGADA SPGPMTLVSN FFSENDPDSE  60
YRSFSQLLAG AMGSPVGVMN RRTSFSTERL KEEDKLKEKE KESRDGDDKD FAGLKQNRPL  120
SLMVAAQSNN MFTVPPGLSP ATLLESPRFF SPGQGAFGMS HQQALAQVTA QAAQLQSHFH  180
IPSEYSSNIL GPPATSLDQQ PSFGTAPLQM PASRTTMVES SVVSYSEQRS QPPPLIVDKP  240
AEDGYNWRKY GQKQVKGSEF PRSYYKCTHP NCPVKKKVER SLDGHVTEII YKGQHNHEPP  300
QHIKRTKDGG NSNGRPNLAV NTEMGGVQDH SGNLGRSNET AAALSKSRRD QESSQATQEQ  360
LSGSSDGEEV GDAETRVDAE DEGQPDPKRR NTGVRVSEPA SSHRAVTEPR IIVQTTSEVD  420
LLDDGYRWRK YGQKVVKGNP HPRSYYKCTS QGCNVRKHVE RASTDAKAVI TTYEGKHNHD  480
VPAAKNSSHN TAHSNLSQIK PQNAVGVKHT LINKNMDFGG GDQQAVSLLR FKEEQVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-40242483878Probable WRKY transcription factor 4
2lex_A4e-40242483878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258215.10.0PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9XI901e-176WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2G5F4M40.0A0A2G5F4M4_AQUCA; Uncharacterized protein
STRINGAquca_002_00721.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-166WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]