PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G342600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 496aa MW: 53862.4 Da PI: 5.6322

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G342600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.5e-40	137	197	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Aqcoe3G342600.1.p 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSV 197 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-31	134	194	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	139	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	141	195	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	143	179	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MSGTKDPAIK LFGKTIPLPS NEEIHGDRGG GEGDGDVVIE ESSDFSSIDE KKLKQEGEEL 60 TEEDEDPSSK RPTDIKVQEG SQPLVSEELA DATSSGNNEN PKTPSYENEV GVTKDDRNEE 120 EQSDTSSSQE KSILKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKNSVSHY RHITVSEALQ APRPDAPNGI HHPTVKPNGT ILTFGSDAPL 240 CESMASVLSL AEKTMRNGTR NGFHKQEEQK IPVSSGGESG DENSMRSSVT ATSSTEEGRR 300 VGLPESSMQN MNGFPPQIPC FPGAPWPYPW NSAVPPPSFC PSNFPISFFP APTYWGCPIP 360 GAWSIPWMAP PQSSPNSGAP SSGPNSPHLG KHSREGDMLK TNTSENVDLP KHSNSAGGVW 420 IPKTLRIDDP GEAAKSSIWA TLGIKNDNSD PMNGGRIFKA FQSKGDEKNH MDENSQVLHA 480 NPAALSRSLN FHESA*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MSGTKDPAIK LFGKTIPLPS NEEIHGDRGG GEGDGDVVIE ESSDFSSIDE KKLKQEGEEL  60
TEEDEDPSSK RPTDIKVQEG SQPLVSEELA DATSSGNNEN PKTPSYENEV GVTKDDRNEE  120
EQSDTSSSQE KSILKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKNSVSHY RHITVSEALQ APRPDAPNGI HHPTVKPNGT ILTFGSDAPL  240
CESMASVLSL AEKTMRNGTR NGFHKQEEQK IPVSSGGESG DENSMRSSVT ATSSTEEGRR  300
VGLPESSMQN MNGFPPQIPC FPGAPWPYPW NSAVPPPSFC PSNFPISFFP APTYWGCPIP  360
GAWSIPWMAP PQSSPNSGAP SSGPNSPHLG KHSREGDMLK TNTSENVDLP KHSNSAGGVW  420
IPKTLRIDDP GEAAKSSIWA TLGIKNDNSD PMNGGRIFKA FQSKGDEKNH MDENSQVLHA  480
NPAALSRSLN FHESA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283706.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A2G5F412	0.0	A0A2G5F412_AQUCA; Uncharacterized protein
STRING	Aquca_002_00633.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-92	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Aqcoe3G342600.1.p