PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G328500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Whirly
Protein Properties Length: 265aa    MW: 29765.8 Da    PI: 9.6023
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G328500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly204.61.2e-63942312139
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        +yk+kaal++++++p+f+aldsg+ k++++G +ll++a+a ++r+ydW++kq+f+ls  e+++l+ l+  ++ceffhdp +++s+eGkvrk+
  Aqcoe3G328500.1.p  94 IYKGKAALTIEPKAPEFVALDSGAYKVSKEGMMLLQFAPAFGTRQYDWSRKQVFSLSISEIGTLIGLSGSDTCEFFHDPNKGKSDEGKVRKV 185
                        9******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        lkvePlpdGsGlf+nlsv+n+l++++es+++P+sk+efav+ s ++
  Aqcoe3G328500.1.p 186 LKVEPLPDGSGLFFNLSVQNKLLNVDESIYIPISKGEFAVMVSTFN 231
                        *****************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.9E-7781252IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.51E-7486260IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.4E-5894228IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQFLQSPKCP STLLPHHHHH QQTLNTSVFS TSSNPSLHYF SSTKNTHKRR NLTVKCRRSE  60
YIEPKQPVFN TNSSFIQQDS VGAFTPRVYA GYTIYKGKAA LTIEPKAPEF VALDSGAYKV  120
SKEGMMLLQF APAFGTRQYD WSRKQVFSLS ISEIGTLIGL SGSDTCEFFH DPNKGKSDEG  180
KVRKVLKVEP LPDGSGLFFN LSVQNKLLNV DESIYIPISK GEFAVMVSTF NYILPFLLGW  240
HAFVNSIKPE DSVRFNNANV EWSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1008226332219p24: plant transcriptional regulator PBF-2
1l3a_B1e-1008226332219p24: plant transcriptional regulator PBF-2
1l3a_C1e-1008226332219p24: plant transcriptional regulator PBF-2
1l3a_D1e-1008226332219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603431.11e-111single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-106WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A2G5F3G30.0A0A2G5F3G3_AQUCA; Uncharacterized protein
STRINGAquca_002_00510.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-106ssDNA-binding transcriptional regulator