PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G310600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family E2F/DP
Protein Properties Length: 378aa    MW: 43090.6 Da    PI: 8.7196
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G310600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.61.8e-223297171
            E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                       rkeksL+ll+++fl+l+ k + + ++l e++++L    +   rRRiYDi+NVLe+++++e+k+k+e++wkg
  Aqcoe3G310600.1.p 32 RKEKSLGLLCTNFLSLYDKGDVQSIELGEASRRL---GI--VRRRIYDIVNVLESIGILERKAKKEYSWKG 97
                       79*****************999************...88..9***************************98 PP
2E2F_TDP69.93.1e-22168251271
            E2F_TDP   2 keksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        +eksL+llt++f+kll +s+++ +t++++++ L+++         ++k k+RR+YDi+NVL++lnli+k     ++k+++rw g
  Aqcoe3G310600.1.p 168 REKSLVLLTENFVKLLLCSDNQLLTFDKASRILLEDndklllmqsNTKAKVRRLYDIANVLSSLNLIQKtrevgSRKPAFRWLG 251
                        79********************************99*********************************999999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-242997IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-253297IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.15E-143295IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.1E-193397IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-20163252IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-23167251IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-11169252IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.8E-17169251IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNQMDESIDE KVSLLPSSFP DSSGTRHHMY CRKEKSLGLL CTNFLSLYDK GDVQSIELGE  60
ASRRLGIVRR RIYDIVNVLE SIGILERKAK KEYSWKGYYG MVNALKELKE SALREKNVFC  120
VDRTRALDGN RDEHEQSSDS NIASGQDYSS NIELLQKPCL PSKEESKREK SLVLLTENFV  180
KLLLCSDNQL LTFDKASRIL LEDNDKLLLM QSNTKAKVRR LYDIANVLSS LNLIQKTREV  240
GSRKPAFRWL GVSGTQENGS LLSKRREFGT DITNAAVKRT RFDGSAFQKM ENRDFTNEIN  300
QKKLHQPQQS KHSSNAVLCG PKDNDTQKRN EQTLQDRDSL VSSHRLPYYN QALSDIFAHY  360
VEAWNSWYAE AAAMEAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-30322454232Transcription factor E2F8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272100.11e-113PREDICTED: E2F transcription factor-like E2FE isoform X1
TrEMBLA0A2G5F2S20.0A0A2G5F2S2_AQUCA; Uncharacterized protein
STRINGAquca_002_00349.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-81DP-E2F-like 1