PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G292700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 863aa    MW: 99188.3 Da    PI: 6.7863
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G292700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.5e-2376161390
               FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Yne A+++GFsvrksk++++  +g++ +r fvC ++g+r+++++     +++r+  rtgC a++++k+e+ ++w v++l+ eHnH+l 
  Aqcoe3G292700.2.p  76 YNELARKMGFSVRKSKTYRR-ADGSVRCRMFVCFRQGFRARDSRY-PYVKKERKGIRTGCMARMMIKNERPDEWIVSELVFEHNHPLE 161
                        9***************9997.9999*****************999.89999***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1976161IPR004330FAR1 DNA binding domain
PfamPF105513.8E-30281375IPR018289MULE transposase domain
PROSITE profilePS509669.94559595IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-5561595IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-4570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MSSSDSQKEG LGTSEGENEE GVREMTEREQ EQTSQVDQQM ILTEPNVIKE SNLAKYGDIV  60
YEGMMFESEE EAYEKYNELA RKMGFSVRKS KTYRRADGSV RCRMFVCFRQ GFRARDSRYP  120
YVKKERKGIR TGCMARMMIK NERPDEWIVS ELVFEHNHPL ENPEKTFTLR SHRKVEDGVK  180
SEKSDIAGVH LAEGFDNVTH LIQDNESNDV ATVDCESFLQ KRRREELGPD GASEMLDYFT  240
RKQLENPTFF NATMVDDENE MTNFFWADAT SIIDYNYFGD VVILDTTYRT SKFSRPFALF  300
AGVNHHKQTV VFGNALLIDE STESFVWLFD TWMKAMSGKK PKTILTDQCT EIAKAVSLVL  360
PETRHRYCLW HIFQNGVKHL SQLYWNPDFR HVLKNCLYNY ETEEEFLSGW EKMLQDYKLA  420
KNRWLLDLFK VRQDWALVYG RDTFCADMTT PHRGKSINRF LKSFVRRKYS VAVFLSCYES  480
ALASKRHKEL EEQCETMKTL PDLFVPTPML KQAADKYTHA VFDMFESEYK EHLMCKIEDC  540
GVNGMICKFE VTQEGHAKGS VTIDPSSCQV VCSCKKFEFV GILCHHIVKV LYHRNIHDIP  600
SRYILKRWTK EAKTEDVKEQ DTDLIQAVGN AARIMRYNQL LRKALNISIK GSTNEKVYVM  660
AKRILDNGFK EVEAAARATQ EASVTCSHNS PDVELSTVAD GSDRAHPLET RTMNGLEDCQ  720
RKKKTWTKLV ESTDSMDLPQ NKKSKKGQSD KVLIQNDFNG ASVDPNCSQW VGTPVSSFDI  780
SGFDSYPVVH PNLPYMPSQY TRASSPPAFQ ASPFTNTTTS NASHNHMLHQ VSFMSREPQL  840
LANLFPQPHS TIPVPESNQI FM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026405195.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X3
RefseqXP_026405196.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X4
TrEMBLA0A2G5F1Z40.0A0A2G5F1Z4_AQUCA; Uncharacterized protein
STRINGAquca_002_00182.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5