PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G289100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Dof
Protein Properties Length: 312aa    MW: 35150 Da    PI: 7.0081
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G289100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.24.9e-4054113261
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        +++alkcprCds++tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknk++
  Aqcoe3G289100.1.p  54 HDQALKCPRCDSSHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNIPVGGGCRKNKRV 113
                        7899******************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2752107IPR003851Zinc finger, Dof-type
PfamPF027012.3E-3355112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.25558112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGFTSLQTCM DTSDQWLHHQ GTASEERRME SSPPLGDMIT CSRPMSEKKL RPQHDQALKC  60
PRCDSSHTKF CYYNNYSLSQ PRYFCKTCRR YWTKGGSLRN IPVGGGCRKN KRVSVKKSSD  120
DQSLNPQLSS SSHDGTDLQL SFPHEVQLSH LNTFLANNGD LGNSNFLENK YNSMLENHRQ  180
FEFMESKFGN LMGNHRNHDF MSTDLGLVSG LSHANHELTS NFHDQFSHYG ISFNGTNGNI  240
MDTCQRLMLP FDGSEDPNAI EMKPNKQLLS LDWQDQGCSE VGKESFAYYN GMGSWNGLMN  300
GYGSSTTNPL V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243051.11e-152PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBLA0A2G5F1Q20.0A0A2G5F1Q2_AQUCA; Uncharacterized protein
STRINGAquca_002_00150.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.16e-50Dof family protein