PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G283200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | YABBY | ||||||||
Protein Properties | Length: 167aa MW: 19034.7 Da PI: 7.5042 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 160 | 1.9e-49 | 2 | 147 | 23 | 169 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110 vsvP +sl+kvvtvrCGhC+ llsvn++ as qlla+ +e+ ++e+ +e+ + ++ s++ ++es+ + s + +++e+e +p Aqcoe3G283200.3.p 2 QVSVPCSSLLKVVTVRCGHCSGLLSVNMMRASfipvQLLASL---HENEHKEVCHEELERPKDPPSKEFNKESPLMNYSDN--DDEEEEIIP 88 69**************************99985553444444...445555555555555555555555555555555442..567777788 PP YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 p +++PPekrqr+Psaynrfik+eiqr+k+ + +i+h+eafsaa+knWahfP+i ++ Aqcoe3G283200.3.p 89 LNPIINKPPEKRQRAPSAYNRFIKDEIQRLKSIDLNITHKEAFSAASKNWAHFPRIQHQ 147 8888***************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-49 | 2 | 147 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-5 | 93 | 142 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MQVSVPCSSL LKVVTVRCGH CSGLLSVNMM RASFIPVQLL ASLHENEHKE VCHEELERPK 60 DPPSKEFNKE SPLMNYSDND DEEEEIIPLN PIINKPPEKR QRAPSAYNRF IKDEIQRLKS 120 IDLNITHKEA FSAASKNWAH FPRIQHQLDG ESCSYGVRKV DKKPRC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248516.1 | 1e-63 | PREDICTED: axial regulator YABBY 4 | ||||
Refseq | XP_026397983.1 | 3e-63 | axial regulator YABBY 5-like | ||||
Refseq | XP_026419324.1 | 2e-63 | axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 7e-39 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1U7Z7V4 | 3e-62 | A0A1U7Z7V4_NELNU; axial regulator YABBY 4 | ||||
STRING | XP_010248516.1 | 4e-63 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-30 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G283200.3.p |
Publications ? help Back to Top | |||
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