PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G283200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 192aa MW: 21798 Da PI: 6.8407

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G283200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	201.5	3.5e-62	7	172	3	169
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekee 90 + + eq+CyvqC+fC+til+vsvP +sl+kvvtvrCGhC+ llsvn++ as qlla+ +e+ ++e+ +e+ + ++ s++ ++e Aqcoe3G283200.1.p 7 LLELQEQICYVQCGFCTTILLVSVPCSSLLKVVTVRCGHCSGLLSVNMMRASfipvQLLASL---HENEHKEVCHEELERPKDPPSKEFNKE 95 56789*****************************************99985553444444...445555555555555555555555555 PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+ + s + +++e+e +p p +++PPekrqr+Psaynrfik+eiqr+k+ + +i+h+eafsaa+knWahfP+i ++ Aqcoe3G283200.1.p 96 SPLMNYSDN--DDEEEEIIPLNPIINKPPEKRQRAPSAYNRFIKDEIQRLKSIDLNITHKEAFSAASKNWAHFPRIQHQ 172 555555442..5677777888888*************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-61	10	172	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-5	118	167	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSSCNSLLEL QEQICYVQCG FCTTILLVSV PCSSLLKVVT VRCGHCSGLL SVNMMRASFI 60 PVQLLASLHE NEHKEVCHEE LERPKDPPSK EFNKESPLMN YSDNDDEEEE IIPLNPIINK 120 PPEKRQRAPS AYNRFIKDEI QRLKSIDLNI THKEAFSAAS KNWAHFPRIQ HQLDGESCSY 180 GVRKVDKKPR C*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026419324.1	1e-82	axial regulator YABBY 4-like
Swissprot	Q9LDT3	5e-53	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2G5F1M2	1e-80	A0A2G5F1M2_AQUCA; Uncharacterized protein (Fragment)
STRING	Aquca_002_00105.1	2e-81	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-44	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G283200.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]