PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G261200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 438aa MW: 49126.5 Da PI: 8.3842 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.6 | 1.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Aqcoe3G261200.2.p 7 CFHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-11 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.86E-17 | 6 | 54 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.1E-13 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.227 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.1E-7 | 274 | 365 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MGKQGPCFHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDFVEY 60 KVPKVKLVSV KNKEVNFLKR KQIHEHFAVV GEAPQYDQNW RRSIEEDTSN RSSSGSAISY 120 SESCAQYGGT DASSAQSIVW DTHPSRKRTC VTRTKPSSVE KLTKELYSIL HDQQSSHFSG 180 SSEEDLLFDG EAPMVSVEFG HGSILMKHPN SVAREEESEA SSFTIDNKSY TVNEYSGSTS 240 LPVHIDSRSI KIPNVAMVEL KKPVGQGTRQ LQNKGEKSHE TIQVLRNCNS PLRSIDLKDV 300 VTYEEFVNHF THEEQLQLMK YLPSVDTFRL PESLKSMFDS LLFAENLSSF QKLLAEGVFD 360 RSLSEVDADE FKTLKKLALV NLTKSNWIEH YNLLKDVKNK QKTGAKELAT GSKMLHVKRP 420 RNGQNPQGRP SVVLCMS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258735.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-124 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A2G5CI67 | 0.0 | A0A2G5CI67_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_053_00062.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 1e-119 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G261200.2.p |