PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G261200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 529aa    MW: 59242.5 Da    PI: 7.1152
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G261200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Aqcoe3G261200.1.p  7 CFHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                       ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11546No hitNo description
CDDcd002022.27E-17654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-13741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227740IPR000679Zinc finger, GATA-type
PfamPF003203.0E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.6E-7274365IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGKQGPCFHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDFVEY  60
KVPKVKLVSV KNKEVNFLKR KQIHEHFAVV GEAPQYDQNW RRSIEEDTSN RSSSGSAISY  120
SESCAQYGGT DASSAQSIVW DTHPSRKRTC VTRTKPSSVE KLTKELYSIL HDQQSSHFSG  180
SSEEDLLFDG EAPMVSVEFG HGSILMKHPN SVAREEESEA SSFTIDNKSY TVNEYSGSTS  240
LPVHIDSRSI KIPNVAMVEL KKPVGQGTRQ LQNKGEKSHE TIQVLRNCNS PLRSIDLKDV  300
VTYEEFVNHF THEEQLQLMK YLPSVDTFRL PESLKSMFDS LLFAENLSSF QKLLAEGVFD  360
RSLSEVDADE FKTLKKLALV NLTKSNWIEH YNLLKDVKNK QKTGAKELAT GSKMLHVKRP  420
RNGQNPQELQ AMMKSPKRTV TKPSYETKDV LDHEGSCFSP RSLFGFAPDK SSLMLDYLQF  480
NDETSDQDLL LDVPSNGSFP QAELLYPTSS FSSQQASTSS STVYSHLA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026407297.10.0GATA transcription factor 27-like
SwissprotQ8W4H11e-138GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2G5CI720.0A0A2G5CI72_AQUCA; Uncharacterized protein
STRINGAquca_053_00062.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.11e-132GATA transcription factor 26