PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G244100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 637aa MW: 73702.5 Da PI: 7.5045

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G244100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.4	3.2e-30	68	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA ++GFs+rks++++s+ + ei+ rtf+Cs eg r+++ k+ e++ r+ra trtgCka ++v+k+k +++w+v+k+ ++HnH+l+ Aqcoe3G244100.1.p 68 NFYNRYAANMGFSIRKSTTNRSRITSEIIGRTFCCSLEGIRDPRAKAVEERIRNRADTRTGCKAIMVVRKKKkKKTWRVSKVIENHNHALV 158 6********************************************9*****************999999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-27	68	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-11	258	303	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.728	480	516	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-7	491	518	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.4E-5	492	512	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MVCESNVVDD NYIQYDESEE NFINITRDEN EPMCENGADE EYVMNKTDRH VQCPCVGMEF 60 NSHEEAYNFY NRYAANMGFS IRKSTTNRSR ITSEIIGRTF CCSLEGIRDP RAKAVEERIR 120 NRADTRTGCK AIMVVRKKKK KKTWRVSKVI ENHNHALVTP SKRHRLRSQR SVGSTQGHIM 180 DNMLTGGIRT NLMVSFLASE AGGIQNVGFT KKNANNYLTS KQNPAFFYTI QIDSEGRMTN 240 FLWADARSRM DYHYFGDVVC FDPTYGTNKY NMPFVPIVGI NHHYQTVLFG GALLYSETEE 300 AFVLLGTRHY YCSWHIGRNA MKHLAHKINS QPDFFSDFNK CIYDYETIPE FQSCWDAMIK 360 KYNLEENNWL INLFEKCENG HRFTDVTYFA EEFMKQYERA VVDRREEENN ADYDTIYSNR 420 VLRFSMKIEK EASNIYTKAI FKKFQEQLIL GLSYRYKKVE DDGIAFVYKV WMEGYEYKAR 480 TVIFEPSTTN VKCICQMFDF SGYLCRHALK IFVVGDVQNL PEQYILKRWT REAKSGSTVF 540 TKDEGTRLKL KESVALRYSK LCQDGVHIAS KASHSDVVFE VALKGFDDTL KNVEAAIRKL 600 SLHMEPQNGD SGTTSVEVAY PDNILEPLLD PLVKNG*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MVCESNVVDD NYIQYDESEE NFINITRDEN EPMCENGADE EYVMNKTDRH VQCPCVGMEF  60
NSHEEAYNFY NRYAANMGFS IRKSTTNRSR ITSEIIGRTF CCSLEGIRDP RAKAVEERIR  120
NRADTRTGCK AIMVVRKKKK KKTWRVSKVI ENHNHALVTP SKRHRLRSQR SVGSTQGHIM  180
DNMLTGGIRT NLMVSFLASE AGGIQNVGFT KKNANNYLTS KQNPAFFYTI QIDSEGRMTN  240
FLWADARSRM DYHYFGDVVC FDPTYGTNKY NMPFVPIVGI NHHYQTVLFG GALLYSETEE  300
AFVLLGTRHY YCSWHIGRNA MKHLAHKINS QPDFFSDFNK CIYDYETIPE FQSCWDAMIK  360
KYNLEENNWL INLFEKCENG HRFTDVTYFA EEFMKQYERA VVDRREEENN ADYDTIYSNR  420
VLRFSMKIEK EASNIYTKAI FKKFQEQLIL GLSYRYKKVE DDGIAFVYKV WMEGYEYKAR  480
TVIFEPSTTN VKCICQMFDF SGYLCRHALK IFVVGDVQNL PEQYILKRWT REAKSGSTVF  540
TKDEGTRLKL KESVALRYSK LCQDGVHIAS KASHSDVVFE VALKGFDDTL KNVEAAIRKL  600
SLHMEPQNGD SGTTSVEVAY PDNILEPLLD PLVKNG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	RKKKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-114	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe3G244100.1.p