PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G228400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | LSD | ||||||||
Protein Properties | Length: 148aa MW: 15378.9 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.2 | 1.3e-13 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Aqcoe3G228400.2.p 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 5e-15 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Aqcoe3G228400.2.p 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.7e-13 | 107 | 131 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Aqcoe3G228400.2.p 107 CGNCRMLLMYQYGARSVKCAVCNFV 131 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 3.7E-4 | 25 | 128 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.1E-12 | 27 | 57 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-10 | 30 | 54 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 6.14E-5 | 30 | 128 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 8.9E-15 | 66 | 95 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 69 | 93 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.1E-12 | 104 | 134 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 107 | 131 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MPVPLAPYPT PPVSYSLPPP ANGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTTVPPP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCAVCNF VTSVGASPST TEQKFNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075917.1 | 2e-93 | protein LOL1 | ||||
Refseq | XP_012075918.1 | 2e-93 | protein LOL1 | ||||
Refseq | XP_012075919.1 | 2e-93 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 8e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2G5CPJ2 | 1e-100 | A0A2G5CPJ2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_044_00148.1 | 1e-97 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-69 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G228400.2.p |
Publications ? help Back to Top | |||
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