PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G223800.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 310aa    MW: 34967.2 Da    PI: 6.2412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G223800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.1e-15113164155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+eY+k+L+
  Aqcoe3G223800.3.p 113 QRMTHITVERNRRKQMNEYLAVLRSLMPES---YTQRGDQASIVGGAIEYVKELE 164
                        79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-18111179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-14111168No hitNo description
PROSITE profilePS5088815.523112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MLLEAFVSDD LNKYFLNNMY DNVCSTTTQH YIHSSTSTSN LFKNNVGNSG GILFSNNESF  60
EDLTPLDSSS SMQLGGGSFM KTQDDASNST TPRSRKRSRR PRVCKNKEEA ETQRMTHITV  120
ERNRRKQMNE YLAVLRSLMP ESYTQRGDQA SIVGGAIEYV KELEQLLQSL EAQKRQQTQK  180
EGTDESSSNF FPPPFSQFFS CPQFSWCQIP GDNPSENRTA IADIEVTLIE SHANLRILSR  240
KRPHQLFKMV AGFQNLQLTI LHLNVTTLDP LVFYSLSAKV EEGCHLNSVD DIANAVHHML  300
RIIEEEGAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923169.11e-113transcription factor bHLH71-like
SwissprotQ9C7T42e-74BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK911e-74BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2G5ESA90.0A0A2G5ESA9_AQUCA; Uncharacterized protein
STRINGAquca_005_00478.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]