PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G217000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HB-other
Protein Properties Length: 380aa    MW: 41957.4 Da    PI: 8.0114
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G217000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.21e-061375656
                       S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                       +ft++++ e+e++ ++  n  p++e     A+k            +  +qV +WFqNrR+ +k
  Aqcoe3G217000.1.p 13 RFTASEVAEMEACLQEsnNAVPTREVLSTFADKFtnsperagkiIVLPKQVWNWFQNRRYAQK 75
                       689999999999999656889999999999999999999999888899***********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.003781IPR001356Homeobox domain
SuperFamilySSF466891.23E-81278IPR009057Homeodomain-like
PROSITE profilePS500719.1991377IPR001356Homeobox domain
CDDcd000866.82E-41375No hitNo description
Gene3DG3DSA:1.10.10.601.8E-61380IPR009057Homeodomain-like
PfamPF167199.1E-41129256IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRPPHSGGP AFRFTASEVA EMEACLQESN NAVPTREVLS TFADKFTNSP ERAGKIIVLP  60
KQVWNWFQNR RYAQKAKSVK APGKLSVSPL PRAAAVAGDD SIPITIRNVP NSTLPFPSSG  120
RSTMDNNVQM EFEAKSARDG AWYDVATFIS HRMFETADPE VRVRFAGFGA EEDEWVNVRK  180
HVRQRSLPCE ASECVAVLPK DLILCFQEGK DQALYFDAHV LDAQRRRHDV RGCRCRFLVR  240
YDHDLSEEIV PLRKVCRRPE TDYRLHLLHA SKEQGAMELK NSGIIAPIST SRDTSSTIEK  300
GQKQCKQEVS AEEVVMTSTP TQSKEFVAKE TTSRTRDGES NGINMEKKDA PIGDAAKAVG  360
VASGTVTVAG TGENMELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461302604134SHH1 SAWADEE
4iur_B2e-461302604134SHH1 SAWADEE
4iut_A2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461302604134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.11e-172PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.11e-172PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-132SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2G5CIS50.0A0A2G5CIS5_AQUCA; Uncharacterized protein
STRINGAquca_052_00043.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-120sequence-specific DNA binding transcription factors;sequence-specific DNA binding