PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G199100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YC | ||||||||
Protein Properties | Length: 219aa MW: 24538.4 Da PI: 5.5295 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.5 | 2.5e-55 | 41 | 145 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie+++df+nh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw haeenkrrtl+k+diaaa+trtdif Aqcoe3G199100.1.p 41 QLQMFWSYQrqeIEQVNDFRNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWSHAEENKRRTLQKNDIAAAITRTDIF 132 89*****998899******************************************************************************* PP NF-YC 90 dflvdivprdelk 102 dflvdivprde+k Aqcoe3G199100.1.p 133 DFLVDIVPRDEIK 145 **********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.84E-33 | 28 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-21 | 63 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.0E-37 | 64 | 141 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MENNKAQQQQ HQPPSSSSSY PSTIQQTPPP FHHLIQQQQQ QLQMFWSYQR QEIEQVNDFR 60 NHQLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWSHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP RDEIKDETGM GIPYYGPGVT VGRPALPGLD PEMYVHPPSH 180 AWQSVWQTAE DGAYGGGVGG GQANLDGQGY VGHTNSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-55 | 49 | 141 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250693.1 | 1e-101 | PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
Refseq | XP_012467975.1 | 1e-101 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Swissprot | Q9SMP0 | 3e-84 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2G5CR90 | 1e-162 | A0A2G5CR90_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_040_00092.1 | 1e-163 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-84 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G199100.1.p |
Publications ? help Back to Top | |||
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