PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G166900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 511aa    MW: 56269.5 Da    PI: 4.5675
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36231142102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sws+ +nsf+v+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  Aqcoe3G166900.1.p  23 FLSKTYDMVDDSSTDSIVSWSSGNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 105
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i rkk 
  Aqcoe3G166900.1.p 106 LKNIVRKKP 114
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.31E-3618112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-6119112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.1E-3919112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDGNLGIANA HPNSNSSNQL TPFLSKTYDM VDDSSTDSIV SWSSGNNSFI VWNPPEFARD  60
LLPKHFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKNIV RKKPTGAHSN  120
QQPPPQGQTT SVGACVEVGK FGLEEEIERL KRDKNVLMQE LVRLRQQQQA TDHQLQTMGQ  180
RLQGMEQRQQ QMMSFLAKAM QSPGFLAQLV QQQNESTRRI TGVNKKRRLP KQENGPENRH  240
ANAPDGQIVK YQPLMNEAAK AMLRQILKYD APPRLDTDSN PDNFLLDDVS SSSSVSDSGI  300
PSSRICGVTL SEVSPTSGPP YLPVSAGFSA MRPSAAIAEI QSSPSLVSNM VTTTAPIDDM  360
SVLAGMLEGT ATRNQSDMIM HDFSQVGGND VDIGGDSGIS PETGNSIDID PMSAGVDGLP  420
IENNGDIDPD MPLIFDDENE IRLPDINDDF WEQILTMNQL NGDAEENDST TEANCENEQV  480
QPGQNGWDKV QHMNHITEQM GLLTSNNKAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251211218129Heat shock factor protein 1
5d5v_B3e-251211218129Heat shock factor protein 1
5d5v_D3e-251211218129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245198.10.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T611e-165HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2G5ESB30.0A0A2G5ESB3_AQUCA; Uncharacterized protein
STRINGAquca_005_00532.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-105heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]