PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G164600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 674aa    MW: 78225.2 Da    PI: 7.9676
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G164600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.62.3e-1978165191
               FAR1   1 kfYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++YneYA++vGFs+++++++k++++ ++i+ +t++Cs+eg+ ++ ++     r++r+e + gC ak+++k++kd+k+e+tk+  eH+Hel+p
  Aqcoe3G164600.1.p  78 NYYNEYARTVGFSIKIKRTNKHRHDpEKIVLQTLCCSCEGTYTKINTP----RKRREERQFGCLAKFEIKLNKDEKFELTKFIVEHTHELVP 165
                        69**************999998655277999**********9997766....99999*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1678165IPR004330FAR1 DNA binding domain
PfamPF105513.0E-31286380IPR018289MULE transposase domain
PROSITE profilePS5096610.027565603IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-8578605IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-6578600IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
LTECLTIQSC VHKKDAEIKG CTLSEDSREK NPIDVDASNN KNVKDTTSKI QGESAATLDE  60
NLIPKIGLIF ENLKDAYNYY NEYARTVGFS IKIKRTNKHR HDPEKIVLQT LCCSCEGTYT  120
KINTPRKRRE ERQFGCLAKF EIKLNKDEKF ELTKFIVEHT HELVPPTCSY LLRSHRGVKK  180
SQAGIMKKMH SSGLQPSDIY YYFCAEAGGA EHVNFSQSDC NNLLQRGRIE ILKKGDAQCL  240
LEYFKQKKQE NKHFYYNILT NEESEIRGIF FCDALSRRDY ELFGDVICFD TTFHTNNYNL  300
VCAPIVGVNN HGQTTIFGCG VLEGETSDAI VWMFENVLEV MGGKKPSTIF TDQSMAISNA  360
IAFIFPDAHH RLCIWHIFQN GAKHLAIVVA EFDSFSQRFK ECIYEPETVE EFEEIWKALL  420
DDYGLEDNKW LHGLYKLREK WAQVYAHAYF CAGITTTQRS ESINKFLKAY FPSNTLLRAF  480
VDQYTKAMTC RRQKEKEAET QMRQTKPIFC SDWSVEREAS KVYIRKLFNL FQAELKQIID  540
LRIILESGEG TVQIYNVEQL GKRRRTRKVT YNHFDQSAQC TCRKFQFEGI LCSHVLKLFR  600
DLDLGNLPTQ YYLKRWTRSI TDEVVYDSYG EVIPSDIDPK SQVATVSSHI FFRDLWLKVQ  660
NLTHYFRLSS QRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397296.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A200PMW30.0A0A200PMW3_9MAGN; FAR1 DNA binding domain
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-125FAR1-related sequence 5