PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G124700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 537aa MW: 61649.3 Da PI: 4.6113 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 272 | 318 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd ll+++v ++G ++W+ Ia+++ gR +kqc++rw+++l Aqcoe3G124700.1.p 272 RGQWTLEEDRLLARLVDKYGLRSWSHIAQMLK-GRIGKQCRERWHNHL 318 89*****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.6e-17 | 324 | 366 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd l++ +++lG++ W+ Ia++++ gRt++++k++w+ Aqcoe3G124700.1.p 324 KETWTEEEDIVLIQTHAELGNK-WAEIAKRLP-GRTENSIKNHWN 366 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.682 | 267 | 318 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-31 | 269 | 365 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 271 | 320 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 273 | 325 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-13 | 275 | 318 | No hit | No description |
Pfam | PF13921 | 6.1E-18 | 275 | 333 | No hit | No description |
PROSITE profile | PS51294 | 26.996 | 319 | 373 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 323 | 371 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 326 | 371 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-11 | 326 | 369 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MEFDTNYKED VISDSTSLWE NHMEPDLLGN EFSIDECSPN GYFQDFRQFD HISIVGSSSN 60 LEFDVPSPRF ERLEAALGNK SATNFEIYES KPLVEGGDDC SMDFIGDESK PIGKEGDICS 120 NGIEKSMSKP LEGEGDECTM NFDVYESEPA IEGGKCNMNF NTYDSNTLAQ DDNCSVFDIY 180 ESKPFTKDEN RVMQNFWSSE FLNHPQGSLV PMVEQHQSEL SSNFQEIEPL NYALPDENSC 240 ITGDQTSYQE VEFDRNDALV RRRTGKGHRI PRGQWTLEED RLLARLVDKY GLRSWSHIAQ 300 MLKGRIGKQC RERWHNHLRP NIKKETWTEE EDIVLIQTHA ELGNKWAEIA KRLPGRTENS 360 IKNHWNATKR KQYTKRRSRT KGSKSTLLQN YIKSLSSNSR LADYHKNRFK SLTSYSMVSD 420 YQKNRLANAP IEFATNNTMM TELQTPHPDE SDFYASDGLD QNYNFNENLE FNYGPKMLSD 480 DCSIESILKE VSSDCGIDEG SFEVKKLEEV NSMMLTEVKK DMDLVEMISQ INVKRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-43 | 272 | 372 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-43 | 272 | 372 | 4 | 104 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021650673.1 | 1e-105 | transcription factor MYB98-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-75 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G124700.1.p |