PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G088200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

WRKY

Protein Properties

Length: 613aa MW: 66130.8 Da PI: 6.7896

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G088200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6.1e-30	264	323	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+ +d +++++tYeg+Hnh+ Aqcoe3G088200.1.p 264 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCVDDMSILITTYEGTHNHP 323 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	249	325	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-27	257	325	IPR003657	WRKY domain
PROSITE profile	PS50811	28.323	259	325	IPR003657	WRKY domain
SMART	SM00774	3.3E-36	264	324	IPR003657	WRKY domain
Pfam	PF03106	1.6E-26	265	323	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
METASSTRYS LVVPIKEEKK VVESNGNHKE VADISTEKVG NDHNSSKPLS PPSQNDLSKN 60 NKQVSAVTTA SRRSSMDIEL KVSPTHKDED EELESAKVEM GGVRQENERL KTVLSRIVKD 120 YQSLQMHFFD IVQHEQAKKT EDPTPMHEDE EHDLISLSLG RSSSEHKKDE KTTSNSSKSK 180 PDEEGLALGL DCKFEGPNRG LIEPATNPST EDSFGETKEE EAGEQWPPSK ILKTMRSADD 240 DVSQQPPVKK ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPACPVRK 300 QVQRCVDDMS ILITTYEGTH NHPLPVAATA MASTTAAAAY MLTSGSTSSR PGFPSSASTS 360 ADLHGLNFSL SDNSRSRQYY LPNTSISSSP SCPTITLDLT APSSSSLSAS QFNRLSSNFP 420 TMPRYSSTNF SFSSESNTQP ISWGNGYLSS GSQSYHNNQM GSLNLGRQQQ EHFYQPYMQK 480 NNNPASQQSL TDTITAATKA VTSDPTFRSA LAAAITSIVS SGGGGNGSGG SHANQVGLET 540 LSQSLKWGTD PLQALSAYSS ATAGNGCAST YLNRSSASNA QQGSLMFLPP SLPFTSTKSA 600 SASPVDNRDH IN*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

METASSTRYS LVVPIKEEKK VVESNGNHKE VADISTEKVG NDHNSSKPLS PPSQNDLSKN  60
NKQVSAVTTA SRRSSMDIEL KVSPTHKDED EELESAKVEM GGVRQENERL KTVLSRIVKD  120
YQSLQMHFFD IVQHEQAKKT EDPTPMHEDE EHDLISLSLG RSSSEHKKDE KTTSNSSKSK  180
PDEEGLALGL DCKFEGPNRG LIEPATNPST EDSFGETKEE EAGEQWPPSK ILKTMRSADD  240
DVSQQPPVKK ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPACPVRK  300
QVQRCVDDMS ILITTYEGTH NHPLPVAATA MASTTAAAAY MLTSGSTSSR PGFPSSASTS  360
ADLHGLNFSL SDNSRSRQYY LPNTSISSSP SCPTITLDLT APSSSSLSAS QFNRLSSNFP  420
TMPRYSSTNF SFSSESNTQP ISWGNGYLSS GSQSYHNNQM GSLNLGRQQQ EHFYQPYMQK  480
NNNPASQQSL TDTITAATKA VTSDPTFRSA LAAAITSIVS SGGGGNGSGG SHANQVGLET  540
LSQSLKWGTD PLQALSAYSS ATAGNGCAST YLNRSSASNA QQGSLMFLPP SLPFTSTKSA  600
SASPVDNRDH IN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-21	264	325	17	77	Probable WRKY transcription factor 4
2lex_A	7e-21	264	325	17	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256554.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5	1e-124	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2G5C9H2	0.0	A0A2G5C9H2_AQUCA; Uncharacterized protein
STRING	Aquca_074_00051.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-87	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Aqcoe3G088200.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]