PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G085900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25647.5 Da PI: 5.8204 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.5e-18 | 23 | 76 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Aqcoe3G085900.2.p 23 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWK 76 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.6 | 6.1e-42 | 22 | 114 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE++Fe +kLeperK++lar Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n++L++++++L++e++ Aqcoe3G085900.2.p 22 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFDAVKDNNDALQAQNKKLQAEIM 113 69**************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Aqcoe3G085900.2.p 114 A 114 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-19 | 14 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 21 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.57E-15 | 23 | 79 | No hit | No description |
Pfam | PF00046 | 3.7E-15 | 23 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 25 | 85 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 49 | 58 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 58 | 74 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.1E-16 | 78 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSFSGVENGD EDLSDDGSQA GEKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARVLGLQ 60 PRQIAIWFQN RRARWKTKQL EKDYDILKRQ FDAVKDNNDA LQAQNKKLQA EIMALKGGEP 120 TESINLNKET EGSCSNRSEN SSEINLDISR TPAIDSPLSS NPSRPLFPTS MRPASIVQLL 180 QSSSRADAHC QKSQNPTQEE SICHIFNAID DQPSFWPWSE NQQYH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 78 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010242413.1 | 1e-130 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 2e-89 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2G5C9H3 | 1e-165 | A0A2G5C9H3_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_074_00028.1 | 1e-165 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 8e-92 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G085900.2.p |
Publications ? help Back to Top | |||
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