PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G079400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 41522.9 Da PI: 6.906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8e-53 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrFhPtdeelv++yLk+k+++++l++ e ik++diyk++PwdLp + ++++ekewyf+++rd+ky+++ r+nr+tk+g+Wkatg+d++ Aqcoe3G079400.1.p 14 MLPGFRFHPTDEELVSFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPkELASTGEKEWYFYCPRDRKYRNSARPNRVTKAGFWKATGTDRP 104 579***************************.89***************445566889*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Aqcoe3G079400.1.p 105 VYSSdGSKCIGLKKSLVFYQGRAAKGMKTDWMMHEFRL 142 ***966677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-57 | 14 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.388 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-26 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNEKHESDNI DEIMLPGFRF HPTDEELVSF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60 KELASTGEKE WYFYCPRDRK YRNSARPNRV TKAGFWKATG TDRPVYSSDG SKCIGLKKSL 120 VFYQGRAAKG MKTDWMMHEF RLPSLTNSMA LKRPIDKNLP ANDAWAICRI FKKTNSVAQR 180 ALSQSWISSV STTSTTETSS STQLNCNNND FKTSNVYSFP STDIPSIKPI EQISSMPSIL 240 SIINGDFPSG FNMFSTLDMS PPSLLGDNMN TSNNLDFAGI QQLCDSFPIR SQNEIQAGNT 300 MTSKEDVWFN SPKVSNVHNQ LGNFESVEFP IPMFDEWRPN LLWDPLSFPT EFSIDYSANK 360 CYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-52 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-52 | 5 | 179 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-52 | 5 | 179 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 5 | 179 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026420940.1 | 1e-147 | putative NAC domain-containing protein 94 isoform X1 | ||||
Swissprot | Q9ZVH0 | 3e-99 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2G5ENY9 | 0.0 | A0A2G5ENY9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_006_00295.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 4e-95 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G079400.1.p |
Publications ? help Back to Top | |||
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