PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G070300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | bHLH | ||||||||
Protein Properties | Length: 479aa MW: 52686.3 Da PI: 6.0328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6e-09 | 294 | 342 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Aqcoe3G070300.1.p 294 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 342 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.82E-11 | 289 | 346 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-17 | 289 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.478 | 291 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-17 | 292 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-6 | 294 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 297 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MDLSDKDKFG LEKRDGDPLN YHSSNISPEW QFGNANQSNQ PMGLVSINPS AAYDRNAISS 60 PVSMVDSFCL DGSNIQSRGN PFFQTGGEIM PRNLSQFPAD SNFIQRADRF SCFNGGSFSD 120 VVNPYNISKS MNNYSKDGAM IRGSSEALSP NALKNALGVQ TQTKEKTDDV AGFVRATDET 180 TNECKMSNET EVSGSDRQVK PSLLETPGEP SASKGQTVKK RKRICQGTEI DRTEGSPQLQ 240 SETAQDDNET EQKNGQKRSN VGKTTRHGKE SSQNSDAAKE DYIHVRARRG QATNSHSLAE 300 RVRREKISER MKFLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD 360 LNIEGLLAKE IHQSRGCPSM FPFSPDTNIG HSQLNPSQQR LSQAGFPGTG NTTDALRRQV 420 SSQMMTINGG GYTESTQIPN MWDEELNNVL QMNFGTTASF NSQDLNGSLS SDQMKVEI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010261471.1 | 1e-169 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_010261481.1 | 1e-169 | PREDICTED: transcription factor bHLH49 | ||||
TrEMBL | A0A2G5EPB5 | 0.0 | A0A2G5EPB5_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_006_00371.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 6e-93 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G070300.1.p |