PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G065400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28840 Da    PI: 8.6981
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G065400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.21.4e-30959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gkl e++s
  Aqcoe3G065400.2.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSKGKLCEFCS 59
                       79***********************************************96 PP
2K-box100.62.3e-338517411100
              K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        + ++ s++qe+ +Lk ++e Lq+ qR+llGedL++Ls+keL q+e+qLe+slk iRs++++++++q+ elqkke++l+e+nk+L+kkl+e
  Aqcoe3G065400.2.p  85 NDTELSSYQEYVRLKGKYEVLQQCQRNLLGEDLDPLSIKELDQIEHQLESSLKVIRSTRTHFMFDQLMELQKKEQMLREANKTLKKKLDE 174
                        45566889*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.59161IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002653.62E-43278No hitNo description
SuperFamilySSF554552.88E-33279IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2788172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.01288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS KGKLCEFCSS  60
SSMLKTLERY RRSSYGALED TPPANDTELS SYQEYVRLKG KYEVLQQCQR NLLGEDLDPL  120
SIKELDQIEH QLESSLKVIR STRTHFMFDQ LMELQKKEQM LREANKTLKK KLDEKAADSH  180
DPLQLLWEAG HKHTPFNHQT QTLQPERFFQ PLECNSTMQI RYNPEGPDHT NVLPRTQSHN  240
GFIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-30751721101Developmental protein SEPALLATA 3
4ox0_B1e-30751721101Developmental protein SEPALLATA 3
4ox0_C1e-30751721101Developmental protein SEPALLATA 3
4ox0_D1e-30751721101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802440.0JX680244.1 Aquilegia coerulea MADS-box protein SEP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260833.11e-121PREDICTED: MADS-box protein CMB1 isoform X1
RefseqXP_019053922.11e-121PREDICTED: MADS-box protein CMB1 isoform X1
SwissprotQ8LLR21e-116MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2G5EPG60.0A0A2G5EPG6_AQUCA; Uncharacterized protein
STRINGAquca_006_00411.11e-172(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.15e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]