PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G065300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family YABBY
Protein Properties Length: 175aa    MW: 19238.7 Da    PI: 9.1151
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G065300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY138.38.6e-4321502165
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        d+  s+e++Cyv+CnfC+t+lav +P +  + +vtv+CGhC ++           l++   ++ +  +++++  ++ ++++++ +++++s+s
  Aqcoe3G065300.1.p   2 DLIPSPEHLCYVRCNFCSTVLAVGIPCKRTLDTVTVKCGHCGNISF---------LSTRPPIQGQCLDHQVDAFQSFRNEYRKGQSSSSSSS 84 
                        77899*************************************9744.........2333333445566666666666666655555554444 PP

              YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf.Pk 165
                        ts  +         +  ++  v++PPe++ r Psaynr++keeiqrik++nP+i hreafs aaknWa + P+
  Aqcoe3G065300.1.p  85 TSCGQ-------PTSPNEPNYVVKPPERKHRLPSAYNRYMKEEIQRIKSANPEIPHREAFSSAAKNWAKYvPH 150
                        44444.......22222233489*********************************************86255 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-527152IPR006780YABBY protein
SuperFamilySSF470952.23E-890146IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4101146IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDLIPSPEHL CYVRCNFCST VLAVGIPCKR TLDTVTVKCG HCGNISFLST RPPIQGQCLD  60
HQVDAFQSFR NEYRKGQSSS SSSSTSCGQP TSPNEPNYVV KPPERKHRLP SAYNRYMKEE  120
IQRIKSANPE IPHREAFSSA AKNWAKYVPH SQAGTVSGGK KNERVPAKES LDGA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8547970.0AY854797.1 Aquilegia formosa CRABS CLAW mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015886.15e-83protein CRABS CLAW
SwissprotQ8L9251e-61CRC_ARATH; Protein CRABS CLAW
TrEMBLA0A2G5EPI91e-127A0A2G5EPI9_AQUCA; Uncharacterized protein
TrEMBLQ5EMN51e-127Q5EMN5_AQUFO; CRABS CLAW
STRINGAquca_006_00412.11e-128(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-62YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]