PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G053900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YB
Protein Properties Length: 155aa    MW: 17210.6 Da    PI: 4.617
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G053900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.43.7e-231193385
              NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                       ++d  lP a + +i+k++lP + ++++da++++ ec +efi +v+se+++ c +e+++ti+++ ++ al  lGf +y++++ +
  Aqcoe3G053900.1.p 11 KEDVTLPKATMFKIIKEMLPPEVRVARDAQDLLVECCVEFINLVSSESNEVCSKEEKRTIAPEHVIKALQVLGFGEYIQEVCT 93
                       68999*************************************************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-378138IPR009072Histone-fold
SuperFamilySSF471132.33E-3312140IPR009072Histone-fold
PfamPF008081.4E-201579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDAMDIVGKS KEDVTLPKAT MFKIIKEMLP PEVRVARDAQ DLLVECCVEF INLVSSESNE  60
VCSKEEKRTI APEHVIKALQ VLGFGEYIQE VCTAYEQHKL ETMDSPKAGK WSGAQMTEEE  120
AAAEQQRMFA EARARMNGGV NITKHSDSDR SLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-351213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841904.19e-96protein Dr1 homolog
RefseqXP_011622414.19e-96protein Dr1 homolog
RefseqXP_020521360.19e-96protein Dr1 homolog
SwissprotP495925e-85NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2G5D7N21e-110A0A2G5D7N2_AQUCA; Uncharacterized protein
STRINGAquca_026_00163.11e-111(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.49e-69nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]