PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G052100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Nin-like

Protein Properties

Length: 919aa MW: 101285 Da PI: 5.6079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G052100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.1e-29	554	604	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Aqcoe3G052100.1.p 554 EKNISLSTLRQHFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 604 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	543	624	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-27	556	604	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.36E-22	814	902	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.6E-22	816	897	No hit	No description
PROSITE profile	PS51745	24.382	818	900	IPR000270	PB1 domain
SMART	SM00666	1.2E-24	818	900	IPR000270	PB1 domain
Pfam	PF00564	1.2E-18	820	899	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MDDGFVESIV DDPFNNLSEF LSFETFLGLC SNNPSPSDQF QPSYCSSPVQ PLPLSSPSYS 60 PMNISAQNSV LLSGSERGLF NGVEDEDEME FQQSEDQTGF KFNSGDGGEF GSKGLVSTSS 120 IANATMVDVI PRPLGFTLAE KMLRALSLFK ESSGGGILAQ VWMPFKQGDK VILSTCEQPF 180 LLDQILAGYR EVSRGFTFSA MESPNTSLGL PGRVFISQMP EWTSNVIYYS KGEYLRVQHA 240 VDHEVRGSLA LPIFRPHDKE CCAVLEVVTM KEKSNFEQEM THVCRSLQAV NLSTSAATRV 300 HPQLCSKNQK VALAEIVDIL RALCHAHMLP LALTWIPCGY TDIINDEFTT VNVGEGKILS 360 NDKSILCIEE AACYVNNKNM QDFMQACAEH HLKKGQGIAG KALESNHPFF SPDIKDYDIR 420 EYPLVHHARK FGLSAAVAIR IRSTYTGKDD YILEFFLPIN CTGSSEQQLL LTNLSSTMQR 480 ICKSLRTVSD AELVGTEDSV VIHGKSSQLV LSDSELDSKE HLAFHNFEHS NEARKPVVAH 540 EQKKQLEKKR SVVEKNISLS TLRQHFSGSL KDAAKSLGVC PTTLKRICRQ HGISRWPSRK 600 INKVNRSLRK IQSVIDSDQG VEAGLKFDAL TGGLVAATTM VHDMEVHNIF PYHKTAIARN 660 STSICSDVIS TFPTSWMKDE SPSLEIGRDE CFSGEHKPEF VGNTFVSMAG KAEIGSFSQD 720 ISMDSSEKER CDILGSSFES FDCHNTSPTS SSIEAADEMD TARDEYFGVI ENSHPTSSGM 780 RNSSNASLST MNGSASSSPN PRQNFLKRKI GIEDCGHRLT VKATYKEDTV RFKFEPSAGY 840 FQLFEEVGKR FKLPTGTFLL KYVDDEKELV MLSSDSDLQE CLEVLESIGS RCIKLSVRDI 900 PCAIGSSASS NSLLLGGS*

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MDDGFVESIV DDPFNNLSEF LSFETFLGLC SNNPSPSDQF QPSYCSSPVQ PLPLSSPSYS  60
PMNISAQNSV LLSGSERGLF NGVEDEDEME FQQSEDQTGF KFNSGDGGEF GSKGLVSTSS  120
IANATMVDVI PRPLGFTLAE KMLRALSLFK ESSGGGILAQ VWMPFKQGDK VILSTCEQPF  180
LLDQILAGYR EVSRGFTFSA MESPNTSLGL PGRVFISQMP EWTSNVIYYS KGEYLRVQHA  240
VDHEVRGSLA LPIFRPHDKE CCAVLEVVTM KEKSNFEQEM THVCRSLQAV NLSTSAATRV  300
HPQLCSKNQK VALAEIVDIL RALCHAHMLP LALTWIPCGY TDIINDEFTT VNVGEGKILS  360
NDKSILCIEE AACYVNNKNM QDFMQACAEH HLKKGQGIAG KALESNHPFF SPDIKDYDIR  420
EYPLVHHARK FGLSAAVAIR IRSTYTGKDD YILEFFLPIN CTGSSEQQLL LTNLSSTMQR  480
ICKSLRTVSD AELVGTEDSV VIHGKSSQLV LSDSELDSKE HLAFHNFEHS NEARKPVVAH  540
EQKKQLEKKR SVVEKNISLS TLRQHFSGSL KDAAKSLGVC PTTLKRICRQ HGISRWPSRK  600
INKVNRSLRK IQSVIDSDQG VEAGLKFDAL TGGLVAATTM VHDMEVHNIF PYHKTAIARN  660
STSICSDVIS TFPTSWMKDE SPSLEIGRDE CFSGEHKPEF VGNTFVSMAG KAEIGSFSQD  720
ISMDSSEKER CDILGSSFES FDCHNTSPTS SSIEAADEMD TARDEYFGVI ENSHPTSSGM  780
RNSSNASLST MNGSASSSPN PRQNFLKRKI GIEDCGHRLT VKATYKEDTV RFKFEPSAGY  840
FQLFEEVGKR FKLPTGTFLL KYVDDEKELV MLSSDSDLQE CLEVLESIGS RCIKLSVRDI  900
PCAIGSSASS NSLLLGGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242719.1	0.0	PREDICTED: protein NLP9-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2G5D7Q7	0.0	A0A2G5D7Q7_AQUCA; Uncharacterized protein
STRING	Aquca_026_00180.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G052100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]