PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G023300.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YC | ||||||||
Protein Properties | Length: 292aa MW: 32455.8 Da PI: 4.7418 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 98.4 | 5.7e-31 | 1 | 70 | 30 | 99 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +k++edvkmis++aPv+++kace+f+lel+lr+wlha +++r+tl++ d++ a+ + ++fdfl+divp++ Aqcoe3G023300.5.p 1 MKSNEDVKMISSDAPVIFAKACEIFVLELSLRTWLHAASSRRQTLRRRDVSRAIGNCQTFDFLLDIVPES 70 9*******************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.41E-19 | 1 | 69 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-9 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-23 | 1 | 69 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MKSNEDVKMI SSDAPVIFAK ACEIFVLELS LRTWLHAASS RRQTLRRRDV SRAIGNCQTF 60 DFLLDIVPES HEEDEVTGGG NEEKDVEPSQ EPDVKPFPVI GPNQVPQNYA EDEVTGQWRG 120 GWQSNGMQSQ LLDFNLSNNY FSGEYHGERR RGALPRGSDA VQISLTGANH LRLNSAYNAG 180 EYLVESRREA LPRPSEAVEI PLTGTNHLHL NAGEYLGESR RRALPRPSDA VEISLTGGTH 240 LQLNSYNAVP HDEELNELTI YGGNRFGPES SSSSELFFPT LGDNRLNHDY M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-23 | 1 | 68 | 27 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5CQ59 | 1e-114 | A0A2G5CQ59_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_041_00104.1 | 1e-115 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 5e-28 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G023300.5.p |