PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G023300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28803.7 Da PI: 4.6722 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 98.7 | 4.6e-31 | 1 | 70 | 30 | 99 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +k++edvkmis++aPv+++kace+f+lel+lr+wlha +++r+tl++ d++ a+ + ++fdfl+divp++ Aqcoe3G023300.4.p 1 MKSNEDVKMISSDAPVIFAKACEIFVLELSLRTWLHAASSRRQTLRRRDVSRAIGNCQTFDFLLDIVPES 70 9*******************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.0E-24 | 1 | 69 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.9E-10 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.37E-19 | 1 | 69 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKSNEDVKMI SSDAPVIFAK ACEIFVLELS LRTWLHAASS RRQTLRRRDV SRAIGNCQTF 60 DFLLDIVPES HEEDEVTGGG NEEKDVEPSQ EPDVKPFPVI GPNQVPQNYA EDEVTGQWRG 120 GWQSNGMQSQ LLDFNLSNNY FSGEYHGERR RGALPRGSDA VQISLTGANH LRLNSAYNAG 180 EYLGESRRRA LPRPSDAVEI SLTGGTHLQL NSYNAVPHDE ELNELTIYGG NRFGPESSSS 240 SELFFPTLGD NRLNHDYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-23 | 1 | 68 | 27 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5CQ59 | 3e-77 | A0A2G5CQ59_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_041_00104.1 | 5e-78 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 3e-28 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G023300.4.p |