PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G023300.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YC
Protein Properties Length: 373aa    MW: 42006.4 Da    PI: 5.2963
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G023300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC137.43.9e-4351151299
              NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                        l+ fw+++   i++ +d++nh+lPlarik+++k++edvkmis++aPv+++kace+f+lel+lr+wlha +++r+tl++ d++ a+ + ++fd
  Aqcoe3G023300.3.p  51 LQCFWTERimeINQINDLRNHQLPLARIKRLMKSNEDVKMISSDAPVIFAKACEIFVLELSLRTWLHAASSRRQTLRRRDVSRAIGNCQTFD 142
                        899**9987668899***************************************************************************** PP

              NF-YC  91 flvdivprd 99 
                        fl+divp++
  Aqcoe3G023300.3.p 143 FLLDIVPES 151
                        *******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.86E-2615144IPR009072Histone-fold
PfamPF008086.6E-1672135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.9E-3073150IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNFGRFFKDN ASSSSSSSSS QFHSFIQVPN NNRPNQQPEE SNFLQAREKL LQCFWTERIM  60
EINQINDLRN HQLPLARIKR LMKSNEDVKM ISSDAPVIFA KACEIFVLEL SLRTWLHAAS  120
SRRQTLRRRD VSRAIGNCQT FDFLLDIVPE SHEEDEVTGG GNEEKDVEPS QEPDVKPFPV  180
IGPNQVPQNY AEDEVTGQWR GGWQSNGMQS QLLDFNLSNN YFSGEYHGER RRGALPRGSD  240
AVQISLTGAN HLRLNSAYNA GEYLVESRRE ALPRPSEAVE IPLTGTNHLH LNAGEYLGES  300
RRRALPRPSD AVEISLTGGT HLQLNSYNAV PHDEELNELT IYGGNRFGPE SSSSSELFFP  360
TLGDNRLNHD YM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3261149694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-42nuclear factor Y, subunit C1