PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G023300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YC

Protein Properties

Length: 374aa MW: 42134.6 Da PI: 5.2963

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G023300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	137.4	4e-43	51	151	2	99
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l+ fw+++ i++ +d++nh+lPlarik+++k++edvkmis++aPv+++kace+f+lel+lr+wlha +++r+tl++ d++ a+ + ++fd Aqcoe3G023300.1.p 51 LQCFWTERimeINQINDLRNHQLPLARIKRLMKSNEDVKMISSDAPVIFAKACEIFVLELSLRTWLHAASSRRQTLRRRDVSRAIGNCQTFD 142 8999987668899************************************************************************* PP NF-YC 91 flvdivprd 99 fl+divp++ Aqcoe3G023300.1.p 143 FLLDIVPES 151 *****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.86E-26	15	144	IPR009072	Histone-fold
Pfam	PF00808	6.6E-16	72	135	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.9E-30	73	150	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MNFGRFFKDN ASSSSSSSSS QFHSFIQVPN NNRPNQQPEE SNFLQAREKL LQCFWTERIM 60 EINQINDLRN HQLPLARIKR LMKSNEDVKM ISSDAPVIFA KACEIFVLEL SLRTWLHAAS 120 SRRQTLRRRD VSRAIGNCQT FDFLLDIVPE SHEEDEVTGG GNEEKDVEPS QEPDVKPFPV 180 IGPNQVPQNY AEDEVTGQWR GGWQSNGMQS QLLDFNLSNN YFSGEYHGER RRGALPRGSD 240 AVQISLTGAN HLRLNSAYNA GEYLVESRRE ALPRPSEAVE IPLTGTNHLH LNAGEYLGES 300 RRRALPRPSD AVEISLTGGT HLQLNSYNAQ VPHDEELNEL TIYGGNRFGP ESSSSSELFF 360 PTLGDNRLNH DYM*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MNFGRFFKDN ASSSSSSSSS QFHSFIQVPN NNRPNQQPEE SNFLQAREKL LQCFWTERIM  60
EINQINDLRN HQLPLARIKR LMKSNEDVKM ISSDAPVIFA KACEIFVLEL SLRTWLHAAS  120
SRRQTLRRRD VSRAIGNCQT FDFLLDIVPE SHEEDEVTGG GNEEKDVEPS QEPDVKPFPV  180
IGPNQVPQNY AEDEVTGQWR GGWQSNGMQS QLLDFNLSNN YFSGEYHGER RRGALPRGSD  240
AVQISLTGAN HLRLNSAYNA GEYLVESRRE ALPRPSEAVE IPLTGTNHLH LNAGEYLGES  300
RRRALPRPSD AVEISLTGGT HLQLNSYNAQ VPHDEELNEL TIYGGNRFGP ESSSSSELFF  360
PTLGDNRLNH DYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-32	61	149	6	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-42	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Aqcoe3G023300.1.p