PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G017500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 117aa    MW: 12721.4 Da    PI: 8.3219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G017500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.5e-175386134
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                       Cs C+ttkT+lWR gp g+ktLCnaC l+ rk+g
  Aqcoe3G017500.1.p 53 CSECRTTKTSLWRTGPAGPKTLCNACYLRKRKMG 86
                       ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-124689No hitNo description
SMARTSM004016.5E-124799IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-144789IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.6354789IPR000679Zinc finger, GATA-type
CDDcd002022.39E-125289No hitNo description
PfamPF003204.3E-145386IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405378IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSDIDLNQKP LLDSDGEDDP NDFKENQKQN EGIGIGSDAE QVVVASRSSV RACSECRTTK  60
TSLWRTGPAG PKTLCNACYL RKRKMGIKKL NKQGELLDKI DAAQALVLLS KSKPNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CQG84e-79A0A2G5CQG8_AQUCA; Uncharacterized protein
STRINGAquca_041_00158.17e-80(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.16e-10GATA family protein