PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aqcoe3G009800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 78404.8 Da PI: 6.5657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 28 | 83 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k Aqcoe3G009800.1.p 28 KKRYHRHTARQIQELERMFKECPHPDEKQRLQLSRDLGLEPRQIKFWFQNRRTQMK 83 688899***********************************************998 PP | |||||||
2 | START | 180.7 | 8.2e-57 | 228 | 449 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ++ a++el+++ +a+ep+W++s+ + +n + + + f++++ ++ea+r+sgvv+m+ ++lv ++d + +W e ++ ka+ Aqcoe3G009800.1.p 228 FSANAMDELIRLLQAGEPLWMRSPvdgrDVLNLESYERMFPRTDHlknpdVRIEASRDSGVVIMNGETLVDMFMDPN-KWVELFPtlvlKAK 318 56789*******************999988888888888887777888989**************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 +++ + sg g lqlm+ elq+lsplv+ R+f+f+Ry++ql++g w+i dvS +s+q++ +s+++ +lpSg+li++++ng+sk+t Aqcoe3G009800.1.p 319 IIDILASGvvgnrsGSLQLMYEELQVLSPLVStREFYFLRYCQQLEQGLWAISDVSFESRQNQFSSPHSR---RLPSGCLIQDMPNGYSKIT 407 **************************************************************98544444...6****************** PP EEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 wvehv++++++p h l+r lv+sg+a+ga +w+atlqr ce+ Aqcoe3G009800.1.p 408 WVEHVEVEEKTPsHRLYRDLVNSGMAFGAERWLATLQRMCER 449 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-21 | 12 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 16 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-19 | 26 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-18 | 28 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-18 | 28 | 86 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.862 | 218 | 452 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.41E-38 | 219 | 450 | No hit | No description |
CDD | cd08875 | 1.59E-121 | 222 | 448 | No hit | No description |
SMART | SM00234 | 1.7E-47 | 227 | 449 | IPR002913 | START domain |
Pfam | PF01852 | 4.0E-49 | 228 | 449 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.3E-7 | 286 | 448 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.76E-24 | 470 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 713 aa Download sequence Send to blast |
MDSGSGGGGG GASGDDQDVS DPHNQRKKKR YHRHTARQIQ ELERMFKECP HPDEKQRLQL 60 SRDLGLEPRQ IKFWFQNRRT QMKAQHERAD NCALRSENDK IRCENIAIRE ALKHVICPSC 120 GGPPMGSTED IYFDEQKLRM DNARLKEELD RVSSIAAKYI GRPISQLPPI QPVSVTSLEL 180 SMGSFGAQGM AGPSLDLDLL PGTSSSLPTL PLQSFGISDM EKSLMAEFSA NAMDELIRLL 240 QAGEPLWMRS PVDGRDVLNL ESYERMFPRT DHLKNPDVRI EASRDSGVVI MNGETLVDMF 300 MDPNKWVELF PTLVLKAKII DILASGVVGN RSGSLQLMYE ELQVLSPLVS TREFYFLRYC 360 QQLEQGLWAI SDVSFESRQN QFSSPHSRRL PSGCLIQDMP NGYSKITWVE HVEVEEKTPS 420 HRLYRDLVNS GMAFGAERWL ATLQRMCERF ACLMVTGTST RDLGGVIPSP DGRRSMMKLS 480 QRMINNFCAS ISASNGHRWT TLSGLNDVGV RVTVHKSTDP GQPNGVVLSA ATSIWLPVSS 540 QNVFNFFRDE RSRPQWDVLS NGNSVQEVAH IANGSHPGNS ISILRAFNAS HNMLILQESC 600 TDSSGSSLVV YASVDLPAIN IAMSGEDPSY IPLLPSGFAI LPDGRPDQGA AGASTSSSTV 660 SRSGGSLVTV AFQILVSSLP NAKLNLESVN TVNNLISTTV QQIKAALNCS GS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268321.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A2G5C5Y7 | 0.0 | A0A2G5C5Y7_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_091_00087.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aqcoe3G009800.1.p |