PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G432800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 23988.2 Da PI: 7.9752 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.6 | 3.8e-27 | 48 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF r+ +s++s+r++++++r++ C+keg++ +++k ++ + r+r+++r gC a++ vkk+k gkw+vtk+ +eHnH+++ Aqcoe2G432800.1.p 48 FYDEYARRLGFVGRIVSSRRSERDRSFISRKLACNKEGYNLSSRKIDRVRIRKRQSQREGCMAMMLVKKQKPGKWVVTKFIKEHNHPMV 136 9******************************************99999999***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-24 | 48 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDLEVRASEG AGTIEDSTGG ELTVCDGDAI QEPYVGMVFE TEDAAKVFYD EYARRLGFVG 60 RIVSSRRSER DRSFISRKLA CNKEGYNLSS RKIDRVRIRK RQSQREGCMA MMLVKKQKPG 120 KWVVTKFIKE HNHPMVVSSN KERPTPDEKD KKIQELSTEL NRANRRLAAC QEQLNVFMKL 180 VEDHTQHLTG TVAEIVHNVR EIDSEEQEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253894 | 0.0 | AC253894.1 Aquilegia coerulea clone COL02-M12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026389315.1 | 1e-107 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Swissprot | Q9SZL8 | 3e-21 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G5CEL9 | 1e-154 | A0A2G5CEL9_AQUCA; Uncharacterized protein (Fragment) | ||||
STRING | Aquca_058_00067.1 | 1e-155 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-62 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G432800.1.p |
Publications ? help Back to Top | |||
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