PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G425400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 322aa MW: 34061.6 Da PI: 8.1121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G425400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.5e-12	252	297	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Av++Ik Lq Aqcoe2G425400.1.p 252 SIAERERRTRISDKLRKLQELVPNM----DKQTSTADMLDLAVQHIKGLQ 297 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.627	246	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-15	249	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.71E-13	250	301	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-14	251	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-13	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	252	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MFPSPHRATG PPSLSRYGSA PGSFLRSVVD SVIAGTEDEF SPVGSESLMT RYFSVGDLST 60 VNNLSRTNST SGGGGGGGGD GSSSLIRHSS SPAGFFNHLV ADNGFTVSRG HGNYNSQAGT 120 SGHATANARL ASQLSFTRQD SLSQISEVSE SIGDGSSSDD GVRNAGQAYV SGRYQMGSWD 180 DGNTIMFSQP SNKRAKTIDG DIVAALSGVD SQFSLPRTSL EMAAVEKLLQ IQPDSVPCKI 240 RAKRGFATHP RSIAERERRT RISDKLRKLQ ELVPNMDKQT STADMLDLAV QHIKGLQTEV 300 QKLNKDLDHC TCGSNSSKPA L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275943.1	1e-144	PREDICTED: transcription factor bHLH128-like
Swissprot	Q8H102	6e-66	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2G5CF18	0.0	A0A2G5CF18_AQUCA; Uncharacterized protein
STRING	Aquca_058_00134.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G425400.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]