PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G410300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 348aa MW: 39571.5 Da PI: 6.8704

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G410300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.7	4.4e-18	143	231	1	84
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsd++ +r+ +p+k+a++h ++k ++ t+t++d +++++++k+ + + ++ lt+GWk+F k +++ + D+v F+ Aqcoe2G410300.1.p 143 FEKKLTPSDAGDFNRMAVPRKCAKQHfppldyTNPKYQP-TITFYDIHNNEFKMKYESWPGCQMNALTRGWKKFLKFHDIHASDTVSFYA 231 99**************************985566566.**********************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-24	139	239	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-22	140	237	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.77E-19	142	230	No hit	No description
SMART	SM01019	6.4E-9	143	244	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.868	143	243	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-15	143	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MADSDCNGGR EEIEQIAMNI AVVDHLDQVV IESSVKEEMN MSLVLANQVI VEPNMEEENK 60 SLVAVVASHE EINVESSMEK ENKSLVLAKR KRCKNNEDTT TTMAPDASMQ RNNNTTRQPG 120 DQLINDHVVV VHADSINWGK LLFEKKLTPS DAGDFNRMAV PRKCAKQHFP PLDYTNPKYQ 180 PTITFYDIHN NEFKMKYESW PGCQMNALTR GWKKFLKFHD IHASDTVSFY AGVDHHLHLA 240 RAHDATNYVY GIHHYREPVL WTRTLRFFGH YYIISEKTPY PVNNQVAANH GGGAIIANGE 300 HAAMFRPNGG RKRIRKAADP RTNYSEQIAE NNQQLVLQSY SCKDEQQ*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MADSDCNGGR EEIEQIAMNI AVVDHLDQVV IESSVKEEMN MSLVLANQVI VEPNMEEENK  60
SLVAVVASHE EINVESSMEK ENKSLVLAKR KRCKNNEDTT TTMAPDASMQ RNNNTTRQPG  120
DQLINDHVVV VHADSINWGK LLFEKKLTPS DAGDFNRMAV PRKCAKQHFP PLDYTNPKYQ  180
PTITFYDIHN NEFKMKYESW PGCQMNALTR GWKKFLKFHD IHASDTVSFY AGVDHHLHLA  240
RAHDATNYVY GIHHYREPVL WTRTLRFFGH YYIISEKTPY PVNNQVAANH GGGAIIANGE  300
HAAMFRPNGG RKRIRKAADP RTNYSEQIAE NNQQLVLQSY SCKDEQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	2e-15	142	240	13	113	DNA-binding protein RAV1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-17	related to ABI3/VP1 2

Link Out ? help Back to Top
Phytozome	Aqcoe2G410300.1.p