PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G404900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HSF

Protein Properties

Length: 527aa MW: 59209.4 Da PI: 5.9117

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G404900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.2	1.5e-34	69	159	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+y++++d++++e++sws+n+nsfvv+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+l Aqcoe2G404900.1.p 69 FLLKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEEFIKDQKHL 151 9**************************************************************999.........*********** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++i+r+k Aqcoe2G404900.1.p 152 LKNIHRRK 159 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.18E-34	65	158	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.7E-37	65	158	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.7E-58	65	158	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.8E-30	69	158	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-18	69	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-18	107	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	108	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-18	120	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MRTLSDPRVN CPQNPDPIIV ILHFTIHQPQ HHKIFLEERN RFDLIMMESG GGVGGGGGGG 60 GGGGGPAPFL LKTYDMVDDS STDEIVSWSS NKNSFVVWNP PEFSRLLLPT FFKHNNFSSF 120 IRQLNTYGFR KIDPEKWEFA NEEFIKDQKH LLKNIHRRKP IHSHTHPQGS EDSERAALDD 180 EIEKLTREKN SIEANLWRIK QQKSRTKLQL DELEQKVREM EQRQLRMMTY LARAVQNPTF 240 VDHLVRMGGS SMYFSPINKK RRLPKGDYIQ DVAETSYIDD QNRSISSHVI QQDFSNKLRL 300 ELSPAVSNTT FLSSYAQSSD EDGVSPQTRT SDEDPHNANL RTETLMLVPQ TLDLSDTGTS 360 FSLGNSSLLS RQGRDTDLTS IEDGDGHIPC HLNLTLASSS LQANNEQYSA KSSQLNHDTI 420 TTEVRSCATV KENNVRDVGN NRNITNNDAI SSSSHEAPAS NQVHAAAQAP ANDGFWEQYL 480 TERPGSPDTE EASSSFRGNQ VDDQEERRPG HGKPWKSTSD MEQLTL*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MRTLSDPRVN CPQNPDPIIV ILHFTIHQPQ HHKIFLEERN RFDLIMMESG GGVGGGGGGG  60
GGGGGPAPFL LKTYDMVDDS STDEIVSWSS NKNSFVVWNP PEFSRLLLPT FFKHNNFSSF  120
IRQLNTYGFR KIDPEKWEFA NEEFIKDQKH LLKNIHRRKP IHSHTHPQGS EDSERAALDD  180
EIEKLTREKN SIEANLWRIK QQKSRTKLQL DELEQKVREM EQRQLRMMTY LARAVQNPTF  240
VDHLVRMGGS SMYFSPINKK RRLPKGDYIQ DVAETSYIDD QNRSISSHVI QQDFSNKLRL  300
ELSPAVSNTT FLSSYAQSSD EDGVSPQTRT SDEDPHNANL RTETLMLVPQ TLDLSDTGTS  360
FSLGNSSLLS RQGRDTDLTS IEDGDGHIPC HLNLTLASSS LQANNEQYSA KSSQLNHDTI  420
TTEVRSCATV KENNVRDVGN NRNITNNDAI SSSSHEAPAS NQVHAAAQAP ANDGFWEQYL  480
TERPGSPDTE EASSSFRGNQ VDDQEERRPG HGKPWKSTSD MEQLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-20	60	158	17	129	Heat shock factor protein 1
5d5v_B	1e-20	60	158	17	129	Heat shock factor protein 1
5d5v_D	1e-20	60	158	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246534.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-137	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2G5CXD0	0.0	A0A2G5CXD0_AQUCA; Uncharacterized protein
STRING	Aquca_034_00075.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-139	HSF family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G404900.1.p

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]