PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G393900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 533aa    MW: 58870.5 Da    PI: 6.1681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G393900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15325371455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+k Lq
  Aqcoe2G393900.1.p 325 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKALQ 371
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.012321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-16324375No hitNo description
SuperFamilySSF474592.36E-20324399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13325371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-21325380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MNHFVPDFQM DEDDSIPTSS GFSRQNKSSL PEDNELMELL WQNGQVVLQS QNQRNSKKSP  60
PHKFDSTAKI TPASASASTA VTTEEVQPYQ LFMQEDEMTS WLHYPLEDDS FQRDFCSDLL  120
YPPSSSNYTH SNNKSITQLP DNQRLEENNH NQDPLKPPIP PGKKAELESG FSHFKRFSRL  180
NGKGRDAELQ PPVSDKTIKE STVVESNDIS TVRLSPIVSN GENFTTGSMS TNHEATVGRP  240
GKTAVEHDRD RDVGTTTYDL TMTSSSGGSR ESVEPSTNPP SNDRKRKARE HEENDDDEDA  300
KLETADTKKQ VRGSASARRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKSDKASML  360
DEAIEYLKAL QMQVQVMSMG CSMVPIVFPG VQPYMSPMGM GMGMGMGMGM GMGMSMEYGV  420
RRPIMQFPQV LAGSSMPRPA AAAHLGPRFP MPAYHVPSGS SPDVSAIRPN QSDPSANHIG  480
THGPNQAPFS DSYQRYLSLY NMQAPPGPPQ VQTLAQASTS KGVENQDNQK LG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329334ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245662.11e-153PREDICTED: transcription factor PIF1-like isoform X3
TrEMBLA0A2G5CXU40.0A0A2G5CXU4_AQUCA; Uncharacterized protein
STRINGAquca_034_00180.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.35e-73phytochrome interacting factor 3-like 5