PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G350600.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CPP
Protein Properties Length: 784aa    MW: 85503.8 Da    PI: 5.4932
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G350600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.15.7e-16500538240
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Aqcoe2G350600.3.p 500 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 538
                        589**********************************96 PP
2TCR50.44.5e-16585624140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Aqcoe2G350600.3.p 585 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNTY 624
                        589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.9E-16499540IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.429500625IPR005172CRC domain
PfamPF036381.3E-11502537IPR005172CRC domain
SMARTSM011142.1E-17585626IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-11587623IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MDTPDRTQIA TPISKFEDSP VFNYINSLSP IKPVKSINIA QTFNSLSFSS PPSVFSSPHL  60
SSQRESRFLK RQFFSGSSKP DLSSEDGLTG NTSEAVPDAV QVLGSSAEPP ESSDGGCSIG  120
EVTVDPANEN SELALELPRT LKYDCGSPEC NADSSEGNKT DPTPVVSDLP ETFFQFGENV  180
SVERRLSFQS GADMHGISQV KPNQEVRTES DWESLISDAS DLLIMDSSSN AEASRIEDQD  240
IVDLRSSSFK SLTLHQDNGH DMHISESLVQ IGSCENHEVD NSAAQSAVGE HKETDHTPDV  300
FSSAFQNKTQ ADFPTEIVDN KAGSHISFGG KQRGIRRRCL VFDTAGGRKR KLEEDSTSSS  360
SVSSQSDGKY TSDDKQLVSI RPCSSTSPCM IPGIGLHLNA LAATTRDTRV VKHETLASGK  420
ELISIPSSLS SLHSLSVETK SLTSSLALSS TYTDISPVGN DLQDVLDAPH ASAFKVGEDF  480
NESSPKKKRR KLEQGGESEA CKRCNCKKSK CLKLYCECFA AGVYCVEPCS CQECFNKPVH  540
EDTVLATRKQ IESRNPLAFA PKVIRSSDSV PEIGEESNKT PASARHKRGC NCKKSNCLKK  600
YCECYQGGVG CSINCRCEGC KNTYGRKDGP SPMGFGEAEQ DEEETEAGEK NGLDVSLRNK  660
QVRRDEEQCP DNVLPMTFSF QIGRSSSMQL PFSSFGKPPR SSLPQPNFEK HFQIIPEDET  720
PEFLRGNLSP ITGIKTASPN RKRVSPPHRD FASSPSRRNN RRLVLQSIPS FPSLTQQETS  780
ELQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1750262212120Protein lin-54 homolog
5fd3_B3e-1750262212120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335350RRRCLVFDTAGGRKRK
2484491PKKKRRKL
3485489KKKRR
4485490KKKRRK
5486490KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259114.10.0PREDICTED: CRC domain-containing protein TSO1-like
RefseqXP_010259115.10.0PREDICTED: CRC domain-containing protein TSO1-like
TrEMBLA0A2G5CK700.0A0A2G5CK70_AQUCA; Uncharacterized protein
STRINGAquca_049_00165.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-134TESMIN/TSO1-like CXC 2