PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G340600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | FAR1 | ||||||||
Protein Properties | Length: 568aa MW: 66198.4 Da PI: 7.0431 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.9 | 9.2e-25 | 71 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF+vrk++++++ +n++i +r f+Cskeg+r+++++ + + r+ tr+gCka+l++k++ dg + v ++ +eHnHel Aqcoe2G340600.1.p 71 EFYSRYARHIGFKVRKNSTHQK-TNKTISRRLFCCSKEGFRRTHTRG--PSLKARPPTRIGCKARLQIKLQ-DGIYSVVEFIKEHNHELE 156 6**************9987765.8888****************9988..999*******************.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-20 | 71 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-30 | 280 | 373 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MDGQSRGFSF ELNESCDQLS SQSEDQASED DLHTRGNIRN EVDYEISGNY IVDVPKPKVG 60 MKFQTDSEAY EFYSRYARHI GFKVRKNSTH QKTNKTISRR LFCCSKEGFR RTHTRGPSLK 120 ARPPTRIGCK ARLQIKLQDG IYSVVEFIKE HNHELESGSK DQDLRLQGKN QSSEAEVLEN 180 RNHERTGSTI SHSQITMSAE VGAFPNLNST QFGCTSHMQH RINEVLQKGD AQFLFHYMQR 240 MQKENPYFVY SIRMSEDNQL GCCFWCDAKS RIDYSFFGDV VCFDTTYKTN DYEKPYAPFV 300 GLNNHGQFIL FACALLLEET VESFIWLFQT FLEAMNGKQP KTIFTEQSMP ITKAVQQVFF 360 NTHHRLCLRH IYQDSMKHLH QVSEQFTSFA EDVKMCIYDG KTEEEFQSSW SHLLDKYTLG 420 ENEWLHDLYQ MRQKWVPAYD QEHFSAGMTT IQRSEGMSKF LKKYLKRFLP LQEFVFQYER 480 ALNTQREKEK DQDLISKQTK PELRTMWPAE ARAAERYTRK IFMSFQDEYV GTLDLLAEVA 540 SEDGSVSTYK VSSFAKVDQR GKSWCCS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026389309.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-112 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G340600.1.p |