PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G333900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YC | ||||||||
Protein Properties | Length: 280aa MW: 31356.2 Da PI: 5.7773 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.5 | 1.3e-55 | 86 | 189 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdif Aqcoe2G333900.1.p 86 QLQTFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 177 89******9999******************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivpr++l Aqcoe2G333900.1.p 178 DFLVDIVPREDL 189 *********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.21E-32 | 80 | 180 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-21 | 108 | 171 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.3E-37 | 109 | 186 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDQQQGHGQS PAMGVVSSGA QMSYVANPYQ PNQMMGDTSG PIVTSVGSIT PPGQPAGYST 60 SPAQLAQHQL AYQQIHHQQQ QQLQQQLQTF WANQYQEIEQ TTDFKNHSLP LARIKKIMKA 120 DEDVRMIAAE APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL 180 VDIVPREDLK DEVLASIPRG GAIPVGGAVD PHPYYYIPQH SPQVGTPGMI MGKPVIDQAL 240 YAQQPRPYMA QQMWPQASQQ QQQQQQQQQL QQEQEHSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-62 | 94 | 186 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 164 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278250.1 | 1e-141 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_010278257.1 | 1e-141 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 4e-89 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2G5CHT0 | 0.0 | A0A2G5CHT0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_054_00147.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-83 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G333900.1.p |