PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G307100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 1181aa    MW: 130955 Da    PI: 9.7303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G307100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-104681340
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                        W++eE e+++da +++G++ Wk++a+ +  +R+ +++
  Aqcoe2G307100.1.p 46 QWSKEELERFYDAYRKYGKD-WKKVASVVR-NRSIEMV 81
                       6*****************99.*********.**98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4134295IPR017884SANT domain
SuperFamilySSF466891.35E-104289IPR009057Homeodomain-like
SMARTSM007175.5E-54391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-54578IPR009057Homeodomain-like
PfamPF002491.4E-84681IPR001005SANT/Myb domain
CDDcd001671.16E-64781No hitNo description
SMARTSM011352.3E-58644745IPR033471DIRP domain
PfamPF065843.7E-33644744IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1181 aa     Download sequence    Send to blast
MASTRKSRSV NKRFSKVNEE SPDKDGGNGS KNKQQKRKLA DRIGSQWSKE ELERFYDAYR  60
KYGKDWKKVA SVVRNRSIEM VEALYTLNRA YLSLPEGTAS VVGLIAMMTD HYNVLEGSES  120
DRESNDEPGI SRKPQKRARG KFRSSVSKGL DEPVPDLLRS QSTASNYGCL SLLKKKRSGG  180
SRPRAVGKRT PRFPVSYSYD KYEGQKFVSP NKQVRKSEVD ANDDEVAVLV LAEALQRGGS  240
PQVSQTPNKR KELMRPSFVR NGERMQGTDE DGFEGSLGSR EAENGDFARD SSYMMDTEGV  300
GTVEVQQKGK RSRGKKSKFK DADNDPFNDV REACSGTEEG ISGKEKVEDE VTDTIRARPS  360
PRGSRRRSRQ LFFGDESSAL DALCTLADLS MKLAPTSTVE SESSVQFKEE KVTSDRIDKS  420
SRHEAMSAND RRGKAKVSGD KEKAHQIVAG VDASAHKKSK KETGLTTLSE ASKHPCQSIM  480
KVRKRKRKSL GAKVQEPKVV EANSESKLTE PQQAELPAEE EKKSTSKSKR IVQIANAPIQ  540
KQGRSVRPPE RTSSIANSLR IGTNPAVSVV QVSSANQVNL PTKLRSRRKK SLVRKELKSP  600
ENIGNDRSNK FSHALHNKAL DLKEKLSSCL SSQMLRRWCS FEWFYSAIDY PWFAKREFVE  660
YLNHVGLGHV PRLTRVEWGV IRSSLGKPRR LSQQFLREEK EKLEQYRESV RTHYTELRTG  720
IREGLPTDLA QPLSVGQRVI ACHPKTRELH DGGVLTVDRN KCRVQFDRPE LGVEFVMDID  780
CMPLNPLENM PEALRRQNFA GDKLQENVSE PKPNGRSKDL KVGGNVKAAL SENQENAEGT  840
SHISSPTYSM NTLLKHAKGD TINSISQAKA AACDIANAQK ATYTQPCTLA QIQAREADIR  900
ALSELTRALD KKEALVLELR HMNDEVLEKQ KDGDNALKDS ELFKKQYATV LIQLKEANDQ  960
VSSALLYLRQ RNTYQGNSPP PWTKPVANSN GPAGSVSSLE QAAFHPQESG SRVHEILETS  1020
RLKAQTMVDA AVQAMSTLKD GEDAFARVGE ALDSADPGTS AVRSCASSDQ GVGGLANHEP  1080
TYTCTSDSVM TNNGNGQKPT STTEKNEVQI PSELMSSCVA TLLMIQTCTE RQYPPAEVAQ  1140
ILDSAVTSLQ PFCSQNLPIY REIQMCMGLV KNQILALIPT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241815.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A2G5F0M50.0A0A2G5F0M5_AQUCA; Uncharacterized protein
STRINGAquca_003_00823.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding