PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe2G305100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 21274.1 Da PI: 8.9692 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.2 | 6.6e-55 | 37 | 132 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvtseasdkc++ekrkt+ngdd++wa+ tlGf++y+eplk yl+kyrel Aqcoe2G305100.1.p 37 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTSEASDKCHKEKRKTVNGDDICWAMKTLGFDEYAEPLKRYLHKYREL 128 79****************************************************************************************** PP NF-YB 94 egek 97 egek Aqcoe2G305100.1.p 129 EGEK 132 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.3E-55 | 32 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.19E-41 | 39 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-27 | 42 | 106 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.9E-20 | 70 | 88 | No hit | No description |
PRINTS | PR00615 | 2.9E-20 | 89 | 107 | No hit | No description |
PRINTS | PR00615 | 2.9E-20 | 108 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVDNIGGWSS TTGGHKVKVG GGGATSSTSA DEKGCFKEQD RLLPIANVGR IMKQILPPNA 60 KISKEAKETM QECVSEFIGF VTSEASDKCH KEKRKTVNGD DICWAMKTLG FDEYAEPLKR 120 YLHKYRELEG EKANQKATNA AGKNESSTVG DEKDISILKR ILICIKIQTR YLPTRNEQAT 180 HGTGNLHNWR NT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 9e-45 | 37 | 127 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 9e-45 | 37 | 127 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010269452.1 | 1e-73 | PREDICTED: nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O82248 | 7e-58 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A2G5F0I5 | 1e-106 | A0A2G5F0I5_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_003_00805.1 | 1e-107 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 6e-60 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe2G305100.1.p |
Publications ? help Back to Top | |||
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