PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G281600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 168aa    MW: 18522.2 Da    PI: 10.1883
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G281600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-183266135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C+ttkTplWR gp g+k+LCnaCG+++rk+++
  Aqcoe2G281600.1.p 32 CVDCKTTKTPLWRGGPAGPKSLCNACGIKHRKQRR 66
                       ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-132565No hitNo description
SMARTSM004019.7E-152678IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-152766IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.67E-133282No hitNo description
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.443262IPR000679Zinc finger, GATA-type
PfamPF003201.7E-163266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIDIEVKETM DLSEKESGSQ GSVGSQDMKK CCVDCKTTKT PLWRGGPAGP KSLCNACGIK  60
HRKQRRALMG VNKSGSQIHK KKEIGNQESN NNNKLDLSLR NEESNNKLDV SLRNQESNSK  120
LDVSLRLRLL TFGRQVSLRR SSKQRKLGEE EQAAVLLMAL SCGSIYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268075.11e-46PREDICTED: GATA transcription factor 16-like
SwissprotQ9LIB52e-31GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A2G5EZP51e-117A0A2G5EZP5_AQUCA; Uncharacterized protein
STRINGAquca_003_00608.11e-118(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.13e-27GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]