PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G241000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 707aa    MW: 76931 Da    PI: 7.2753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G241000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16447493455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  Er+RRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Aqcoe2G241000.2.p 447 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 493
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-20441503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-17446497No hitNo description
PfamPF000101.7E-13447493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-19447501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MPYSHLHRMA KEKLESSTHQ RMNSSFKDLA SVERPDSDFS ELVWENGQIL MQGQSNRSRK  60
SSSNANTTTQ GKEEEHPPNT KKPHSGLNDF SSGQSSRPMG FGQDDELVHW LNYPLDEYSS  120
EFFSEFNQNT FSMQNTVVPV VKNTSNSQVI RSSQGGANPE QGNLSKFLRE SSDHTRVRDT  180
QLCSLPRSQQ HQNSIQSQRL KVPDSTGCNT NNAELAHSTG SPNPKIQQQE PEATQPNSNT  240
GFTNFSHFLR PATFVKTSRQ SADTAPSSSP MNIDRRRSND KEFVVSESNR IQSTVIDSAN  300
GSKTFTGHES KFNSLTPKGD VKPPIGKRPP KEPLSIEKSV AGCREDAFAK SKLPEPTPGQ  360
TSSFAASMTV GRPDNEKCFE PVVASSSVCS GTSAMGASND PKHRLKRKFR DTEDSDYLSE  420
DIEEESVGVR KPARGCTSTK RSRAAEVHNL SERKRRDRIN EKMRALQELI PNCNKVDKAS  480
MLDEAIEYLK TLQLQVQIMS MGTGLFMPPM MLPNGIQHVN TPNLPPFSAM NPGMGMGMGM  540
GMSMGMGMGF GMGMVDMSGG SSGCPLIQVP PMHGAQFPYS SISGPSNLPM MAGANFQMFG  600
PPGQGISMSI PRAPFIHPAG GPSTNSSMLP VVSGVETSTE IQNLASPSCL KDPTEVTNAQ  660
LPNRNAECSQ NQIPAKVTKE GVEQSLLAPM HDHPPQASDN GVNEPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451456ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271074.10.0PREDICTED: transcription factor PIF3 isoform X2
TrEMBLA0A2G5EY980.0A0A2G5EY98_AQUCA; Uncharacterized protein
STRINGAquca_003_00259.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-60phytochrome interacting factor 3