PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G205000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family E2F/DP
Protein Properties Length: 379aa    MW: 41024.9 Da    PI: 7.4173
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G205000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.49.3e-27125207271
            E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        k+++Lr+++++   ++ek+++ g++t+neva+eLv+e                d+kn+rRR+YD++NVL+a+++i+k +++ei+wkg
  Aqcoe2G205000.1.p 125 KGRGLRQFSMR---VCEKVQSkGRTTYNEVADELVAEfsdpcnnvltpsqqqdDEKNIRRRVYDAINVLMAMDIISK-DRKEIQWKG 207
                        789********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.7E-11322378IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.0E-43123212IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-30124207IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.1E-24126207IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-20127208IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.95E-43212315IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-40213342No hitNo description
SMARTSM011382.2E-70214376IPR014889Transcription factor DP, C-terminal
PfamPF087811.4E-39215347IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MISSGGGVNV EKHGGDQNPT IVSTKGGITT STSLGRMFSG QLSISTTGGS ASAGGGGSPS  60
PSNTSETTTT TTTTTATNKT LLPSENFRLS HPAPDIHKDK DDATAPTQPT PTFIVKKKRA  120
AGGDKGRGLR QFSMRVCEKV QSKGRTTYNE VADELVAEFS DPCNNVLTPS QQQDDEKNIR  180
RRVYDAINVL MAMDIISKDR KEIQWKGLPH VSLNDIEELK AERVAVRSRI EKKAAYLQEL  240
EEQYIGLQNL IQRNEQLYGS GIAPTGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS  300
TPFELNDDNY VLKAMRLCGR PHSNDGAHDS TANGGDSSMP NMHQPQLLHP PRSNAASRAP  360
TSPPPLPGIL KPRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-32119209190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.11e-164PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.11e-164PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-120DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G5CD000.0A0A2G5CD00_AQUCA; Uncharacterized protein
STRINGAquca_062_00025.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-116Transcription factor DP