PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G185000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 571aa    MW: 62633 Da    PI: 7.2514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G185000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.99.4e-17188276186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  + +L++a++++ ++l+rg+l++ +Weevs+ +     + +  +s +qCk+k +nl+kryk + +++++   ++++++++f+++e
  Aqcoe2G185000.1.p 188 EWSDAAISCLLDAYTDKFNQLNRGNLRGRDWEEVSAIVsercDKLKSGKSVEQCKNKVDNLKKRYKVELQRMNNS-GTKVTHWVWFKKIE 276
                        5*********************************999876557778889*****************888777764.677789*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-19186278No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-74323563IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B34.566328564IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.67E-59329563IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.41E-126331564No hitNo description
TIGRFAMsTIGR020752.1E-73331563IPR015963Uridylate kinase, bacteria
PfamPF006969.1E-25332543IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MASCDDDFGL LSDHDHVHHH HQAQSSHHLH SPPFDSHHHH HHHHHRFGPK PMPPLPPPPP  60
PPPPPNQSLS LSPLSPTKRV AGGGGGAANV GDNDDDEVEE NEDDYSDAGF CSQPNTTTTM  120
TKGPTSFPFS DEGEHFVDES SDLNKSRANS RPEKQRRDRD ELSDGGTPYY KRSKSGEYRV  180
DCRKDREEWS DAAISCLLDA YTDKFNQLNR GNLRGRDWEE VSAIVSERCD KLKSGKSVEQ  240
CKNKVDNLKK RYKVELQRMN NSGTKVTHWV WFKKIEQIVN NASTSKTVSD EDKSVVGSAN  300
MLRQAKRYPT ATNVAAGLVN KPKSLSNPRW RRVVFKISGA ALAGTGSQNI DAKVALLISR  360
EVAIACRLGV EVAIVLGGRN FFCGDSWVTS TGLDRSTAYQ IGMMATVMNS ILLQSALEKL  420
GVETRVQTAF AMQEVAEPYS KRRAIRHLEK GRVVIFGGIG AGTGNPLFTT DTAAALRASE  480
VNADAVLKGT NVDGVYDCHS RNSNNVAFEH ISFRELVSRG VTSMDMMAIT FCEENGIPVV  540
VFNLHEPGNI SRALCGEQVG TLIDQAGRIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-633245633239Uridylate kinase
3ek5_B1e-633245633239Uridylate kinase
3ek5_C1e-633245633239Uridylate kinase
3ek5_D1e-633245633239Uridylate kinase
3ek5_E1e-633245633239Uridylate kinase
3ek5_F1e-633245633239Uridylate kinase
3ek6_A1e-633245633239Uridylate kinase
3ek6_B1e-633245633239Uridylate kinase
3ek6_C1e-633245633239Uridylate kinase
3ek6_D1e-633245633239Uridylate kinase
3ek6_E1e-633245633239Uridylate kinase
3ek6_F1e-633245633239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278264.10.0PREDICTED: uncharacterized protein LOC104612522 isoform X1
TrEMBLA0A2G5DIU50.0A0A2G5DIU5_AQUCA; Uncharacterized protein
STRINGAquca_019_00072.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein