PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G157700.6.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 604aa    MW: 67511.5 Da    PI: 4.9748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G157700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11355398755
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +Er+RR+++N+++  Lr l+Pk +      K++ a+iL  A+e++k+Lq
  Aqcoe2G157700.6.p 355 VAERKRRKKLNDRLYALRALVPKiS------KMDRASILGDAIEFVKELQ 398
                        68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-219155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.84E-13346402No hitNo description
PROSITE profilePS5088815.428348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16351412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-15354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.15E-5492558No hitNo description
CDDcd048737.17E-5496558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MGGFHNLLEK LRPLVGLKSW DYCVLWKLSE DQRFIEWVGC CCGGVDHNIQ NGGDELLFSV  60
STVLSCKDVM FQHSRTKNCD LLAQLPSSMP LDSGIHGHAL ISNQPRWINL SDFPNSSASD  120
ETVGTKVLIP VFGGLVELFI AKQVSEDSQL IEFVMAQCNV QWDQEAMNTQ MDGYAMNDNG  180
IIGNESKQFP SNVFDLKTPS NLWASPASTT SDNLNLPWDV SLEQIRGCNS PMNFFNGLVQ  240
QFPSTSENRL RNDIGGFEGS TESIISDRPT TAFNSFVEHG FPEFVPLHQS LMENSTSLHP  300
SVDSCVTKQP STEKDSIKQE SGRADSGSDC SDQNEDDDQK TVGRGGKRHH SKNLVAERKR  360
RKKLNDRLYA LRALVPKISK MDRASILGDA IEFVKELQKR VKDLQDELEE PSDENGDKNK  420
ITNGDKNGIS PGTKSEQDES LEGIKFGITD QGTRCSSNGK ITNCMKQTED FMTAEEKPRM  480
EPQVEVTQMD GKEFYLKVFC EHRPGGFVRL TEAMSSLGLE VTNVNVNTFR SLVMNVFKVE  540
RRDNEMVQPD FVRDSLLDIT RSPIGGWSEP FLVSENGSNL DYNHPQQANT HRHRHLNSLN  600
LQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-14346407263Transcription factor MYC2
5gnj_B9e-14346407263Transcription factor MYC2
5gnj_E9e-14346407263Transcription factor MYC2
5gnj_F9e-14346407263Transcription factor MYC2
5gnj_G9e-14346407263Transcription factor MYC2
5gnj_I9e-14346407263Transcription factor MYC2
5gnj_M9e-14346407263Transcription factor MYC2
5gnj_N9e-14346407263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356363ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876341.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2G5DJ540.0A0A2G5DJ54_AQUCA; Uncharacterized protein
STRINGAquca_019_00147.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-143bHLH family protein